Integrative proteogenomics for differential expression and splicing variation in a DM1 mouse model.

Proteogenomics alternative splicing myotonic dystrophy type 1 (DM1)

Journal

Molecular & cellular proteomics : MCP
ISSN: 1535-9484
Titre abrégé: Mol Cell Proteomics
Pays: United States
ID NLM: 101125647

Informations de publication

Date de publication:
20 Nov 2023
Historique:
received: 31 07 2022
revised: 02 09 2023
accepted: 17 11 2023
medline: 23 11 2023
pubmed: 23 11 2023
entrez: 22 11 2023
Statut: aheadofprint

Résumé

Dysregulated mRNA splicing is involved in the pathogenesis of many diseases including cancer, neurodegenerative diseases, and muscular dystrophies such as myotonic dystrophy type 1 (DM1). Comprehensive assessment of dysregulated splicing on the transcriptome and proteome level has been methodologically challenging, and thus investigations have often been targeting only few genes. Here, we performed a large-scale coordinated transcriptomic and proteomic analysis to characterize a DM1 mouse model (HSA

Identifiants

pubmed: 37993104
pii: S1535-9476(23)00194-9
doi: 10.1016/j.mcpro.2023.100683
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

100683

Informations de copyright

Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Conflict of interest All authors are employees of Novartis, and some hold Novartis stock.

Auteurs

Elizaveta M Solovyeva (EM)

Novartis Institute for Biomedical Research, NIBR Informatics, 4056 Basel, Switzerland; V.L. Talrose Institute for Energy Problems of Chemical Physics, N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, Moscow 119334, Russia. Electronic address: elizaveta.solovyeva@novartis.com.

Stephan Utzinger (S)

NIBR, Musculoskeletal Diseases, 4056 Basel, Switzerland.

Alexandra Vissières (A)

NIBR, Analytical Sciences and Imaging, 4056 Basel, Switzerland.

Joanna Mitchelmore (J)

NIBR, Musculoskeletal Diseases, 4056 Basel, Switzerland.

Erik Ahrné (E)

NIBR, Analytical Sciences and Imaging, 4056 Basel, Switzerland.

Erwin Hermes (E)

NIBR, Analytical Sciences and Imaging, 4056 Basel, Switzerland.

Tania Poetsch (T)

NIBR, Analytical Sciences and Imaging, 4056 Basel, Switzerland.

Marie Ronco (M)

NIBR, Musculoskeletal Diseases, 4056 Basel, Switzerland.

Michael Bidinosti (M)

NIBR, Musculoskeletal Diseases, 4056 Basel, Switzerland.

Claudia Merkl (C)

NIBR, Musculoskeletal Diseases, 4056 Basel, Switzerland.

Fabrizio C Serluca (FC)

NIBR Informatics, Cambridge, MA 02139, USA.

James Fessenden (J)

NIBR, Musculoskeletal Diseases, Cambridge, MA 02139, USA.

Ulrike Naumann (U)

NIBR, Chemical Biology & Therapeutics, 4056 Basel, Switzerland.

Hans Voshol (H)

NIBR, Analytical Sciences and Imaging, 4056 Basel, Switzerland.

Angelika S Meyer (AS)

NIBR, Musculoskeletal Diseases, 4056 Basel, Switzerland.

Sebastian Hoersch (S)

Novartis Institute for Biomedical Research, NIBR Informatics, 4056 Basel, Switzerland. Electronic address: sebastian.hoersch@novartis.com.

Classifications MeSH