A Deep Insight into the Diversity of Microfungal Communities in Arctic and Antarctic Lakes.
Antarctica
Arctic
extreme environments
fungal community
fungal diversity
fungal ecology
next generation sequencing
polar lakes
Journal
Journal of fungi (Basel, Switzerland)
ISSN: 2309-608X
Titre abrégé: J Fungi (Basel)
Pays: Switzerland
ID NLM: 101671827
Informations de publication
Date de publication:
09 Nov 2023
09 Nov 2023
Historique:
received:
04
10
2023
revised:
30
10
2023
accepted:
03
11
2023
medline:
24
11
2023
pubmed:
24
11
2023
entrez:
24
11
2023
Statut:
epublish
Résumé
We assessed fungal diversity in water and sediment samples obtained from five Arctic lakes in Ny-Ålesund (Svalbard Islands, High Arctic) and five Antarctic lakes on Livingston and Deception Islands (South Shetland Islands), using DNA metabarcoding. A total of 1,639,074 fungal DNA reads were detected and assigned to 5980 ASVs amplicon sequence variants (ASVs), with only 102 (1.7%) that were shared between the two Polar regions. For Arctic lakes, unknown fungal taxa dominated the sequence assemblages, suggesting the dominance of possibly undescribed fungi. The phylum
Identifiants
pubmed: 37998900
pii: jof9111095
doi: 10.3390/jof9111095
pmc: PMC10672340
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Italian National Antarctic Research Program project MicroPolArS 2020-2023.
ID : PNRA18_00194
Références
Int J Syst Evol Microbiol. 2022 Jul;72(7):
pubmed: 35776761
BMC Bioinformatics. 2015 May 22;16:169
pubmed: 25994840
Nucleic Acids Res. 2019 Jan 8;47(D1):D259-D264
pubmed: 30371820
Antonie Van Leeuwenhoek. 2014 Mar;105(3):593-601
pubmed: 24435686
Sci Rep. 2022 May 19;12(1):8407
pubmed: 35589789
Sci Rep. 2019 Dec 27;9(1):20230
pubmed: 31882659
Mikrobiologiia. 2014 Mar-Apr;83(2):236-44
pubmed: 25423727
Microorganisms. 2022 Jan 26;10(2):
pubmed: 35208737
Can J Microbiol. 2009 Jan;55(1):46-56
pubmed: 19190700
Sci Rep. 2017 Nov 10;7(1):15348
pubmed: 29127335
FEMS Microbiol Ecol. 2012 Nov;82(2):459-71
pubmed: 22671312
Microb Ecol. 2008 Oct;56(3):448-59
pubmed: 18253776
Int J Syst Evol Microbiol. 2012 Mar;62(Pt 3):728-734
pubmed: 21515705
Sci Rep. 2023 Jan 5;13(1):177
pubmed: 36604573
Bioinformatics. 2017 Jun 9;33(19):3137-3139
pubmed: 28605449
FEMS Microbiol Ecol. 2000 Jun 1;32(3):235-240
pubmed: 10858582
Extremophiles. 2021 Mar;25(2):193-202
pubmed: 33651232
Sci Rep. 2016 Jul 22;6:30120
pubmed: 27444055
Extremophiles. 2021 Nov;25(5-6):471-481
pubmed: 34480232
Microb Ecol. 2021 Jul;82(1):157-164
pubmed: 33404819
Nat Rev Microbiol. 2019 Jun;17(6):339-354
pubmed: 30872817
FEMS Microbiol Lett. 2013 Sep;346(2):121-30
pubmed: 23862768
Biology (Basel). 2013 May 30;2(2):798-809
pubmed: 24832809
Braz J Microbiol. 2023 Sep;54(3):1923-1933
pubmed: 36274089
Life (Basel). 2018 Sep 06;8(3):
pubmed: 30200614
Mycologia. 2018 Jan-Feb;110(1):201-214
pubmed: 29863989
Sci Rep. 2015 Oct 23;5:14524
pubmed: 26494429
Extremophiles. 2021 Jan;25(1):77-84
pubmed: 33416982
Environ Microbiol. 2016 Jan;18(1):232-45
pubmed: 26235221
FEMS Yeast Res. 2015 Jun;15(4):fov019
pubmed: 25903381
Fungal Biol. 2020 Jun;124(6):601-611
pubmed: 32448451
Fungal Biol. 2016 Nov;120(11):1392-1415
pubmed: 27742096
Extremophiles. 2020 Jul;24(4):637-655
pubmed: 32533308
Microb Ecol. 2016 Apr;71(3):543-54
pubmed: 26492897
Extremophiles. 2021 May;25(3):257-265
pubmed: 33837855
Front Microbiol. 2022 Sep 23;13:900158
pubmed: 36212846
Microb Ecol. 2022 Jan;83(1):58-67
pubmed: 33733305
Environ Microbiol Rep. 2015 Jun;7(3):435-41
pubmed: 25625632
Environ Microbiol. 2011 Jun;13(6):1433-53
pubmed: 21635672
Front Microbiol. 2014 Apr 22;5:166
pubmed: 24795703
World J Microbiol Biotechnol. 2014 Jan;30(1):65-76
pubmed: 23824664
Extremophiles. 2022 May 2;26(2):16
pubmed: 35499659
Sci Rep. 2020 Dec 11;10(1):21793
pubmed: 33311553
Antonie Van Leeuwenhoek. 1969;35(4):433-62
pubmed: 5311574
Gigascience. 2020 Nov 30;9(12):
pubmed: 33252655
Nat Rev Microbiol. 2016 Jul;14(7):434-47
pubmed: 27296482
Sci Rep. 2020 Dec 15;10(1):21986
pubmed: 33319803
Microb Ecol. 2011 May;61(4):832-43
pubmed: 21221569
Braz J Microbiol. 2011 Jul;42(3):937-47
pubmed: 24031709
Fungal Biol. 2022 Oct;126(10):640-647
pubmed: 36116896
Life (Basel). 2018 Jul 23;8(3):
pubmed: 30041476
Mar Genomics. 2009 Mar;2(1):43-50
pubmed: 21798171
Microb Ecol. 2021 Jul;82(1):165-172
pubmed: 33161522