Reversible histone deacetylase activity catalyzes lysine acylation.


Journal

bioRxiv : the preprint server for biology
Titre abrégé: bioRxiv
Pays: United States
ID NLM: 101680187

Informations de publication

Date de publication:
17 Nov 2023
Historique:
pubmed: 28 11 2023
medline: 28 11 2023
entrez: 28 11 2023
Statut: epublish

Résumé

Starvation and low carbohydrate diets lead to the accumulation of the ketone body, β-hydroxybutyrate (BHB), whose blood concentrations increase more than 10-fold into the millimolar range. In addition to providing a carbon source, BHB accumulation triggers lysine β-hydroxybutyrylation (Kbhb) of proteins via unknown mechanisms. As with other lysine acylation events, Kbhb marks can be removed by histone deacetylases (HDACs). Here, we report that class I HDACs unexpectedly catalyze protein lysine modification with β-hydroxybutyrate (BHB). Mutational analyses of the HDAC2 active site reveal a shared reliance on key amino acids for classical deacetylation and non-canonical HDAC-catalyzed β-hydroxybutyrylation. Also consistent with reverse HDAC activity, Kbhb formation is driven by mass action and substrate availability. This reverse HDAC activity is not limited to BHB but also extends to multiple short-chain fatty acids. The reversible activity of class I HDACs described here represents a novel mechanism of PTM deposition relevant to metabolically-sensitive proteome modifications.

Identifiants

pubmed: 38014285
doi: 10.1101/2023.11.17.567549
pmc: PMC10680841
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NIDDK NIH HHS
ID : P30 DK026743
Pays : United States
Organisme : NIA NIH HHS
ID : R00 AG058801
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM142505
Pays : United States

Déclaration de conflit d'intérêts

Declaration of Interests The authors declare no competing interests.

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Auteurs

Takeshi Tsusaka (T)

Department of Physiology, University of California, San Francisco; San Francisco, CA, 94158, USA.

Mohd Altaf Najar (MA)

Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania; Philadelphia, PA, 19104, USA.

Benjamin Schwarz (B)

Immunity to Pulmonary Pathogens Section, Laboratory of Bacteriology, National Institute of Allergy and Infectious Diseases; Hamilton, MT, 59840, USA.

Eric Bohrnsen (E)

Immunity to Pulmonary Pathogens Section, Laboratory of Bacteriology, National Institute of Allergy and Infectious Diseases; Hamilton, MT, 59840, USA.

Juan A Oses-Prieto (JA)

Department of Pharmaceutical Chemistry, University of California, San Francisco; San Francisco, CA, 94158, USA.

Christina Lee (C)

Department of Molecular and Cell Biology, University of California, Berkeley; Berkeley, CA, 94720, USA.

Alma L Burlingame (AL)

Department of Pharmaceutical Chemistry, University of California, San Francisco; San Francisco, CA, 94158, USA.

Catharine M Bosio (CM)

Immunity to Pulmonary Pathogens Section, Laboratory of Bacteriology, National Institute of Allergy and Infectious Diseases; Hamilton, MT, 59840, USA.

George M Burslem (GM)

Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania; Philadelphia, PA, 19104, USA.
Department of Cancer Biology and Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania; Philadelphia, PA, 19104, USA.

Emily L Goldberg (EL)

Department of Physiology, University of California, San Francisco; San Francisco, CA, 94158, USA.
Chan-Zuckerberg Biohub; San Francisco, CA, 94158, USA.

Classifications MeSH