Long-read sequencing reveals the shell microbiome of apparently healthy American lobsters
16S rRNA gene
Aquimarina
PacBio
core microbiome
epizootic shell disease
microbial ecology
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2023
2023
Historique:
received:
28
06
2023
accepted:
18
10
2023
medline:
29
11
2023
pubmed:
29
11
2023
entrez:
29
11
2023
Statut:
epublish
Résumé
The shell microbial community of lobsters-a key factor in the development of epizootic shell disease (ESD)-is still insufficiently researched in Atlantic Canada and many knowledge gaps remain. This study aimed to establish a baseline description and analysis of the shell microbiome of apparently healthy lobsters from four locations in the region. More than 180 lobster shell swab samples were collected from New Brunswick, Nova Scotia and Prince Edward Island (PEI). PacBio long-read 16S rDNA sequencing and bioinformatic analyses in QIIME2 identified the shell-associated bacteria. The shell microbiome of healthy lobsters consisted mainly of the bacterial classes
Identifiants
pubmed: 38029079
doi: 10.3389/fmicb.2023.1245818
pmc: PMC10658194
doi:
Types de publication
Journal Article
Langues
eng
Pagination
1245818Informations de copyright
Copyright © 2023 Koepper, Clark, McClure, Revie, Stryhn and Thakur.
Déclaration de conflit d'intérêts
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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