resevol: An R package for spatially explicit models of pesticide resistance given evolving pest genomes.


Journal

PLoS computational biology
ISSN: 1553-7358
Titre abrégé: PLoS Comput Biol
Pays: United States
ID NLM: 101238922

Informations de publication

Date de publication:
Dec 2023
Historique:
received: 11 08 2023
accepted: 15 11 2023
revised: 14 12 2023
pubmed: 4 12 2023
medline: 4 12 2023
entrez: 4 12 2023
Statut: epublish

Résumé

The evolution of pesticide resistance is a widespread problem with potentially severe consequences for global food security. We introduce the resevol R package, which simulates individual-based models of pests with evolving genomes that produce complex, polygenic, and covarying traits affecting pest life history and pesticide resistance. Simulations are modelled on a spatially-explicit and highly customisable landscape in which crop and pesticide application and rotation can vary, making the package a highly flexible tool for both general and tactical models of pest management and resistance evolution. We present the key features of the resevol package and demonstrate its use for a simple example simulating pests with two covarying traits. The resevol R package is open source under GNU Public License. All source code and documentation are available on GitHub.

Identifiants

pubmed: 38048359
doi: 10.1371/journal.pcbi.1011691
pii: PCOMPBIOL-D-23-01285
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e1011691

Informations de copyright

Copyright: © 2023 Duthie et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Auteurs

A Bradley Duthie (AB)

Biological and Environmental Sciences, University of Stirling, Stirling, United Kingdom.

Rosie Mangan (R)

Biological and Environmental Sciences, University of Stirling, Stirling, United Kingdom.

C Rose McKeon (CR)

Biological and Environmental Sciences, University of Stirling, Stirling, United Kingdom.

Matthew C Tinsley (MC)

Biological and Environmental Sciences, University of Stirling, Stirling, United Kingdom.

Luc F Bussière (LF)

Biological and Environmental Sciences and Gothenburg Global Biodiversity Centre, The University of Gothenburg, Gothenburg, Sweden.
Gothenburgh Global Biodiversity Centre, Gothenburg, Sweden.

Classifications MeSH