Mapping of the gene network that regulates glycan clock of ageing.

CRISPR/dCas9 genome-wide association study glycan clock glycosylation immunoglobulin G

Journal

Aging
ISSN: 1945-4589
Titre abrégé: Aging (Albany NY)
Pays: United States
ID NLM: 101508617

Informations de publication

Date de publication:
26 Dec 2023
Historique:
received: 12 05 2023
accepted: 06 09 2023
medline: 27 12 2023
pubmed: 27 12 2023
entrez: 27 12 2023
Statut: aheadofprint

Résumé

Glycans are an essential structural component of immunoglobulin G (IgG) that modulate its structure and function. However, regulatory mechanisms behind this complex posttranslational modification are not well known. Previous genome-wide association studies (GWAS) identified 29 genomic regions involved in regulation of IgG glycosylation, but only a few were functionally validated. One of the key functional features of IgG glycosylation is the addition of galactose (galactosylation), a trait which was shown to be associated with ageing. We performed GWAS of IgG galactosylation (N=13,705) and identified 16 significantly associated loci, indicating that IgG galactosylation is regulated by a complex network of genes that extends beyond the galactosyltransferase enzyme that adds galactose to IgG glycans. Gene prioritization identified 37 candidate genes. Using a recently developed CRISPR/dCas9 system we manipulated gene expression of candidate genes in the

Identifiants

pubmed: 38149987
pii: 205106
doi: 10.18632/aging.205106
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Auteurs

Azra Frkatović-Hodžić (A)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Anika Mijakovac (A)

Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia.

Karlo Miškec (K)

Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia.

Arina Nostaeva (A)

Laboratory of Theoretical and Applied Functional Genomics, Novosibirsk State University, Novosibirsk, Russia.

Sodbo Z Sharapov (SZ)

MSU Institute for Artificial Intelligence, Lomonosov Moscow State University, Moscow, Russia.

Arianna Landini (A)

Centre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, UK.

Toomas Haller (T)

Institute of Genomics, University of Tartu, Tartu, Estonia.

Erik van den Akker (EVD)

Department of Biomedical Data Sciences, Molecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands.
Department of Pattern Recognition and Bioinformatics, Delft University of Technology, Delft, The Netherlands.

Sapna Sharma (S)

Research Unit Molecular Endocrinology and Metabolism, Helmholtz Zentrum Muenchen, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.
German Center for Diabetes Research (DZD), Neuherberg, Germany.

Rafael R C Cuadrat (RRC)

Research Unit of Molecular Epidemiology, Helmholtz Zentrum München –Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Munich, Germany.
German Center for Diabetes Research (DZD), Neuherberg, Germany.

Massimo Mangino (M)

Department of Twin Research and Genetic Epidemiology, King’s College London, London, UK.
NIHR Biomedical Research Centre at Guy’s and St Thomas’ Foundation Trust, London, UK.

Yong Li (Y)

Institute of Genetic Epidemiology, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.

Toma Keser (T)

Faculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.

Najda Rudman (N)

Faculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.

Tamara Štambuk (T)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Maja Pučić-Baković (M)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Irena Trbojević-Akmačić (I)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Ivan Gudelj (I)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.
Department of Biotechnology, University of Rijeka, Rijeka, Croatia.

Jerko Štambuk (J)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Tea Pribić (T)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Barbara Radovani (B)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.
Department of Biotechnology, University of Rijeka, Rijeka, Croatia.

Petra Tominac (P)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Krista Fischer (K)

Institute of Genomics, University of Tartu, Tartu, Estonia.
Institute of Mathematics and Statistics, University of Tartu, Tartu, Estonia.

Marian Beekman (M)

Department of Biomedical Data Sciences, Molecular Epidemiology, Leiden University Medical Center, Leiden, The Netherlands.

Manfred Wuhrer (M)

Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden, The Netherlands.

Christian Gieger (C)

Research Unit of Molecular Epidemiology, Helmholtz Zentrum München –Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Munich, Germany.
German Center for Diabetes Research (DZD), Neuherberg, Germany.

Matthias B Schulze (MB)

German Center for Diabetes Research (DZD), Neuherberg, Germany.
Department of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany.
Institute of Nutritional Science, University of Potsdam, Nuthetal, Germany.

Clemens Wittenbecher (C)

Department of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany.
Department of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
SciLifeLab, Division of Food and Nutrition Science, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.

Ozren Polasek (O)

University of Split School of Medicine, Split, Croatia.
Algebra University College, Zagreb, Croatia.

Caroline Hayward (C)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.

James F Wilson (JF)

Centre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, UK.
MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.

Tim D Spector (TD)

Department of Twin Research and Genetic Epidemiology, King’s College London, London, UK.

Anna Köttgen (A)

Institute of Genetic Epidemiology, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.
Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA.

Frano Vučković (F)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Yurii S Aulchenko (YS)

MSU Institute for Artificial Intelligence, Lomonosov Moscow State University, Moscow, Russia.
Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia.

Aleksandar Vojta (A)

Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia.

Jasminka Krištić (J)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.

Lucija Klarić (L)

MRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.

Vlatka Zoldoš (V)

Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia.

Gordan Lauc (G)

Genos Glycoscience Research Laboratory, Zagreb, Croatia.
Faculty of Pharmacy and Biochemistry, University of Zagreb, Zagreb, Croatia.

Classifications MeSH