Rapid Visual Detection of Spiroplasma eriocheiris by Loop-Mediated Isothermal Amplification with Hydroxynaphthol Blue Dye.

Hydroxy naphthol blue dye Loop-mediated isothermal amplification Spiroplasma eriocheiris Visual detection

Journal

Marine biotechnology (New York, N.Y.)
ISSN: 1436-2236
Titre abrégé: Mar Biotechnol (NY)
Pays: United States
ID NLM: 100892712

Informations de publication

Date de publication:
03 Jan 2024
Historique:
received: 13 10 2023
accepted: 22 12 2023
medline: 4 1 2024
pubmed: 4 1 2024
entrez: 3 1 2024
Statut: aheadofprint

Résumé

In recent years, a new type of Spiroplasma has been found that can cause "tremor disease" of the Chinese mitten crab Eriocheir sinensis. The outbreak of epidemic tremor disease has caused a serious setback in the Chinese mitten crab farming industry, with an incidence rate of more than 30% and mortality rates of 80-100%. Therefore, finding a sensitive method to detect tremor disease in E. sinensis has become a current research focus. In this research, a loop-mediated isothermal amplification detection method coupled with hydroxynaphthol blue dye (LAMP-HNB) was developed and used to rapidly detect Spiroplasma eriocheiris. First, we designed and synthesized specific outer primers, inner primers and loop primers based on the 16S ribosomal RNA gene of S. eriocheiris. Second, the LAMP-HNB detection method for S. eriocheiris was successfully established by screening the primers, adjusting the temperature and time of the reaction, and optimizing the concentrations of Mg

Identifiants

pubmed: 38170295
doi: 10.1007/s10126-023-10282-9
pii: 10.1007/s10126-023-10282-9
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Fish Innovation Team of Shandong Agriculture Research System
ID : SDAIT-12-06
Organisme : the Advanced Talents Foundation of QAU
ID : 6651118016
Organisme : Qingdao Agricultural University Doctoral Start-Up Fund
ID : 6631122030
Organisme : National Natural Science Foundation of China
ID : 32002421

Informations de copyright

© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Références

Becherer L, Borst N, Bakheit M, Frischmann S, Zengerle R, Von Stetten F (2020) Loop-mediated isothermal amplification (LAMP) – review and classification of methods for sequence-specific detection. Anal Methods 12:717–746
doi: 10.1039/C9AY02246E
Bi K, Wang W, Zhang X, Yan B (2011) Finding and studies of a novel pathogen, Spiroplasma Eriocheiris sp. Nov., in the Chinese mitten crab Eriocheir Sinensi in China. Intelligent Information Technology Application Association. Agricultural and Natural Resources Engineering (ANRE 2011 ABE V3). Information Engineering Research Institute 2011:5
Ding Z, Bi K, Wu T, Gu W, Wang W, Chen J (2007) A simple PCR method for the detection of pathogenic spiroplasmas in crustaceans and environmental samples. Aquaculture 265:49–54
doi: 10.1016/j.aquaculture.2007.01.032
Ding Z, Yao W, Du J, Ren Q, Li W, Wu T, Xiu Y, Meng Q, Gu W, Xue H, Tang J, Wang W (2013) Histopathological characterization and in situ hybridization of a novel spiroplasma pathogen in the freshwater crayfish Procambarus clarkii. Aquaculture 380–383:106–113
doi: 10.1016/j.aquaculture.2012.12.007
Fischbach J, Xander NC, Frohme M, Glökler JF (2015) Shining a light on LAMP assays–a comparison of LAMP visualization methods including the novel use of berberine. Biotechniques 58:189–194
doi: 10.2144/000114275 pubmed: 25861931
Goto M, Honda E, Ogura A, Nomoto A, Hanaki K-I (2009) Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46:167–172
doi: 10.2144/000113072 pubmed: 19317660
Hou L, Zhou H, Wan H, Liu Z, Wang L, Cheng Y, Wu X, Gu W, Wang W, Meng Q (2020) TMT-based quantitative proteomic analysis of Eriocheir sinensis hemocytes and thoracic ganglion during Spiroplasma eriocheiris infection. Fish Shellfish Immunol 96:126–137
doi: 10.1016/j.fsi.2019.11.009 pubmed: 31760166
Kang J, Jin J, Duan L, Zhou Y, Miao L, Zhou Q, Chen J (2020) A loop-mediated isothermal amplification technique combined with a lateral flow dipstick for the detection of Glugea plecoglossi. J Oceanol Limnol 51:1501–1512
Karthik K, Rathore R, Thomas P, Arun TR, Viswas KN, Dhama K, Agarwal RK (2014) New closed tube loop mediated isothermal amplification assay for prevention of product cross-contamination. MethodsX 1:137–143
doi: 10.1016/j.mex.2014.08.009 pubmed: 26150945 pmcid: 4472950
Kulkarni A, Caipang CM, Brinchmann M, Kiron V (2009) Loop-mediated isothermal amplification - An assay for the detection of atypical furunculosis caused by aeromonas Salmonicida in Atlantic cod, Gadus morhua. J Rapid Methods Autom Microbiol 17:476–489
doi: 10.1111/j.1745-4581.2009.00184.x
Liu H, Xiu Y, Xu Y, Tang M, Li S, Gu W, Meng Q, Wang W (2017) Development of a colloidal gold immunochromatographic assay (GICA) for the rapid detection of Spiroplasma eriocheiris in commercially exploited crustaceans from China. J Fish Dis 40:1839–1847
doi: 10.1111/jfd.12657 pubmed: 28631828
Ma XJ, Shu YL, Nie K, Qin M, Wang DY, Gao RB, Wang M, Wen LY, Han F, Zhou SM, Zhao X, Cheng YH, Li DX, Dong XP (2010) Visual detection of pandemic influenza A H1N1 Virus 2009 by reverse-transcription loop-mediated isothermal amplification with hydroxynaphthol blue dye. J Virol Methods 167:214–217
doi: 10.1016/j.jviromet.2010.03.027 pubmed: 20381535
Moulder RW, French FE, Chang ACJ (2002) Simplified media for spiroplasmas associated with tabanid flies. Can J Microbiol 48:1–6
doi: 10.1139/w01-128 pubmed: 11888158
Nagamine K, Hase T, Notomi T (2002) Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes 16:223–229
doi: 10.1006/mcpr.2002.0415 pubmed: 12144774
Notomi T, Mori Y, Tomita N, Kanda H (2015) Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects. J Microbiol 53:1–5
doi: 10.1007/s12275-015-4656-9 pubmed: 25557475
Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:E63
doi: 10.1093/nar/28.12.e63 pubmed: 10871386 pmcid: 102748
Pang B, Yao S, Xu K, Wang J, Song X, Mu Y, Zhao C, Li J (2019) A novel visual-mixed-dye for LAMP and its application in the detection of foodborne pathogens. Anal Biochem 574:1–6
doi: 10.1016/j.ab.2019.03.002 pubmed: 30862446
Soliman H, Saleh M, El-Matbouli M (2015) Detection of fish pathogens by loop-mediated isothermal amplification (LAMP) technique. Methods Mol Biol 1247:163–173
doi: 10.1007/978-1-4939-2004-4_12 pubmed: 25399095
Srimongkol G, Ditmangklo B, Choopara I, Thaniyavarn J, Dean D, Kokpol S, Vilaivan T, Somboonna N (2020) Rapid colorimetric loop-mediated isothermal amplification for hypersensitive point-of-care Staphylococcus aureus enterotoxin A gene detection in milk and pork products. Sci Rep 10:7768
doi: 10.1038/s41598-020-64710-0 pubmed: 32385390 pmcid: 7211006
Tomita N, Mori Y, Kanda H, Notomi T (2008) Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat Protoc 3:877–882
doi: 10.1038/nprot.2008.57 pubmed: 18451795
Wang J, Huang H, Feng Q, Liang T, Bi K, Gu W, Wang W, Shields JD (2009) Enzyme-liked immunosorbent assay for the detection of pathogenic spiroplasma in commercially exploited crustaceans from China. Aquaculture 292:166–171
doi: 10.1016/j.aquaculture.2009.04.022
Wang W, Chen J, Du K, Xu Z (2004a) Morphology of spiroplasmas in the Chinese mitten crab Eriocheir sinensis associated with tremor disease. Res Microbiol 155:630–635
doi: 10.1016/j.resmic.2004.04.010 pubmed: 15380550
Wang W, Gu W, Gasparich GE, Bi K, Ou J, Meng Q, Liang T, Feng Q, Zhang J, Zhang AY (2011) Spiroplasma eriocheiris sp. nov., associated with mortality in the Chinese mitten crab, Eriocheir sinensis. Int J Syst Evol Microbiol 61:703–708
doi: 10.1099/ijs.0.020529-0 pubmed: 20418415
Wang W, Gu Z (2002) Rickettsia-like organism associated with tremor disease and mortality of the Chinese mitten crab Eriocheir sinensis. Dis Aquat Org 48:149–153
doi: 10.3354/dao048149
Wang W, Rong L, Gu W, Du K, Chen J (2003) Study on experimental infections of Spiroplasma from the Chinese mitten crab in crayfish, mice and embryonated chickens. Res Microbiol 154:677–680
doi: 10.1016/j.resmic.2003.08.004 pubmed: 14643405
Wang W, Wen B, Gasparich GE, Zhu N, Rong L, Chen J, Xu Z (2004b) A spiroplasma associated with tremor disease in the Chinese mitten crab (Eriocheir sinensis). Microbiology (Reading) 150:3035–3040
doi: 10.1099/mic.0.26664-0 pubmed: 15347761
Wang Y, Li XC, Fu G, Zhao S, Chen Y, Wang H, Chen T, Zhou J, Fang W (2017) Morphology and phylogeny of Ameson portunus n. sp. (Microsporidia) infecting the swimming crab Portunus trituberculatus from China. Eur J Protistol 61:122–136
doi: 10.1016/j.ejop.2017.09.008 pubmed: 29055853
Wong YP, Othman S, Lau YL, Radu S, Chee HY (2018) Loop-mediated isothermal amplification (LAMP): a versatile technique for detection of micro-organisms. J Appl Microbiol 124:626–643
doi: 10.1111/jam.13647 pubmed: 29165905
Zhong Z, Hui L, Qiu X (2010) Summarization of detection methods for Spiroplasmas. Anhui Agricultural Science Bulletin 16:44–46
Zhou S, Huang Q, Yu M, Li Y, Zheng X, Xiu Y (2021) Rapid visual detection of Aeromonas salmonicida by loop-mediated isothermal amplification with hydroxynaphthol blue dye. J Fish Dis 44:1993–2001
doi: 10.1111/jfd.13513 pubmed: 34411329
Zhou S, Zheng X, Yang Z, Huang Q, Yi J, Su L, Guo B, Xiu Y (2022) Development of two recombinase polymerase amplification EXO (RPA-EXO) and lateral flow dipstick (RPA-LFD) techniques for the rapid visual detection of Aeromonas salmonicida. Mar Biotechnol (NY) 24:1094–1109
doi: 10.1007/s10126-022-10170-8 pubmed: 36192520

Auteurs

Shun Zhou (S)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.

Zongrui Yang (Z)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.

Baoshan Guo (B)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.

Jingyuan Yi (J)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.

Yunfei Pang (Y)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.

Ruixin Feng (R)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.

Jiaxue Song (J)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China.

Yunji Xiu (Y)

School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China. yunji16@163.com.

Classifications MeSH