Two-step light gradient boosted model to identify human west nile virus infection risk factor in Chicago.


Journal

PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081

Informations de publication

Date de publication:
2024
Historique:
received: 08 06 2023
accepted: 08 12 2023
medline: 5 1 2024
pubmed: 5 1 2024
entrez: 5 1 2024
Statut: epublish

Résumé

West Nile virus (WNV), a flavivirus transmitted by mosquito bites, causes primarily mild symptoms but can also be fatal. Therefore, predicting and controlling the spread of West Nile virus is essential for public health in endemic areas. We hypothesized that socioeconomic factors may influence human risk from WNV. We analyzed a list of weather, land use, mosquito surveillance, and socioeconomic variables for predicting WNV cases in 1-km hexagonal grids across the Chicago metropolitan area. We used a two-stage lightGBM approach to perform the analysis and found that hexagons with incomes above and below the median are influenced by the same top characteristics. We found that weather factors and mosquito infection rates were the strongest common factors. Land use and socioeconomic variables had relatively small contributions in predicting WNV cases. The Light GBM handles unbalanced data sets well and provides meaningful predictions of the risk of epidemic disease outbreaks.

Identifiants

pubmed: 38181002
doi: 10.1371/journal.pone.0296283
pii: PONE-D-23-17817
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0296283

Informations de copyright

Copyright: © 2024 Wan et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Déclaration de conflit d'intérêts

The authors have declared that no competing interests exist.

Auteurs

Guangya Wan (G)

National Center for Supercomputing Applications, University of Illinois, Urbana-Champaign, Illinois, United States of America.
Department of Statistics, University of Illinois, Urbana-Champaign, Illinois, United States of America.

Joshua Allen (J)

National Center for Supercomputing Applications, University of Illinois, Urbana-Champaign, Illinois, United States of America.

Weihao Ge (W)

National Center for Supercomputing Applications, University of Illinois, Urbana-Champaign, Illinois, United States of America.

Shubham Rawlani (S)

National Center for Supercomputing Applications, University of Illinois, Urbana-Champaign, Illinois, United States of America.
Information School, University of Illinois, Urbana-Champaign, Illinois, United States of America.

John Uelmen (J)

Department of Pathobiology, University of Illinois, Urbana-Champaign, Illinois, United States of America.

Liudmila Sergeevna Mainzer (LS)

National Center for Supercomputing Applications, University of Illinois, Urbana-Champaign, Illinois, United States of America.
Car R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Illinois, United States of America.

Rebecca Lee Smith (RL)

National Center for Supercomputing Applications, University of Illinois, Urbana-Champaign, Illinois, United States of America.
Department of Pathobiology, University of Illinois, Urbana-Champaign, Illinois, United States of America.
Car R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Illinois, United States of America.

Classifications MeSH