Single molecule real-time sequencing data sets of Hypericum perforatum L. plantlets and cell suspension cultures.
Journal
Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192
Informations de publication
Date de publication:
06 Jan 2024
06 Jan 2024
Historique:
received:
17
07
2023
accepted:
18
12
2023
medline:
7
1
2024
pubmed:
7
1
2024
entrez:
6
1
2024
Statut:
epublish
Résumé
Hypericum is a large genus that includes more than 500 species of pharmacological, ecological and conservation value. Although latest advances in sequencing technologies were extremely exploited for generating and assembling genomes of many living organisms, annotated whole genome sequence data is not publicly available for any of the Hypericum species so far. Bioavailability of secondary metabolites varies for different tissues and the data derived from different cultures will be a valuable tool for comparative studies. Here, we report the single molecule real-time sequencing (SMRT) data sets of Hypericum perforatum L. plantlets and cell suspension cultures for the first time. Sequencing data from cell suspension cultures yielded more than 33,000 high-quality transcripts from 20 Gb of raw data, while more than 55,000 high-quality transcripts were obtained from 35 Gb of raw data from plantlets. This dataset is a valuable tool for comparative transcriptomic analysis and will help to understand the unknown biosynthetic pathways of high medicinal value in the Hypericum genus.
Identifiants
pubmed: 38184679
doi: 10.1038/s41597-023-02878-6
pii: 10.1038/s41597-023-02878-6
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
42Subventions
Organisme : Narodowe Centrum Nauki (National Science Centre)
ID : 2016/23/b/NZ9/02677
Organisme : Narodowe Centrum Nauki (National Science Centre)
ID : 2017/25/B/NZ9/00720
Organisme : Narodowe Centrum Nauki (National Science Centre)
ID : 2017/25/B/NZ9/00720
Organisme : Narodowe Centrum Nauki (National Science Centre)
ID : 2016/23/b/NZ9/02677
Organisme : Narodowe Centrum Nauki (National Science Centre)
ID : 2016/23/b/NZ9/02677
Organisme : Narodowe Centrum Nauki (National Science Centre)
ID : 2017/25/B/NZ9/00720
Informations de copyright
© 2024. The Author(s).
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