African swine fever virus P72 genotyping tool.

ASF ASFV African swine fever African swine fever virus P72 genotyping swine tool

Journal

Microbiology resource announcements
ISSN: 2576-098X
Titre abrégé: Microbiol Resour Announc
Pays: United States
ID NLM: 101728794

Informations de publication

Date de publication:
08 Jan 2024
Historique:
medline: 8 1 2024
pubmed: 8 1 2024
entrez: 8 1 2024
Statut: aheadofprint

Résumé

Historically, genotyping of African swine fever virus was based on partial sequencing of B646L (p72). Until recently, the number of differences that defined genotypes was ambiguous. This tool allows a sequence to be uploaded and will report its closest matches along with its likely p72 genotype.

Identifiants

DOI: 10.1128/mra.00891-23 PMID: 38189309
pubmed: 38189309
doi: 10.1128/mra.00891-23
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e0089123

Auteurs

Mark Dinhobl (M)

U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, Kansas, USA.
U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, New York, USA.
Center of Excellence for African swine fever Genomics, Guilford, Connecticut, USA.

Edward Spinard (E)

U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, Kansas, USA.
U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, New York, USA.
Center of Excellence for African swine fever Genomics, Guilford, Connecticut, USA.

Hillary Birtley (H)

U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, New York, USA.
Center of Excellence for African swine fever Genomics, Guilford, Connecticut, USA.
Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, Tennessee, USA.

Nicolas Tesler (N)

U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, New York, USA.
Center of Excellence for African swine fever Genomics, Guilford, Connecticut, USA.
Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, Tennessee, USA.

Manuel V Borca (MV)

U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, Kansas, USA.
U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, New York, USA.
Center of Excellence for African swine fever Genomics, Guilford, Connecticut, USA.

Douglas P Gladue (DP)

U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, National Bio and Agro-Defense Facility, Manhattan, Kansas, USA.
U.S. Department of Agriculture, Agricultural Research Service, Foreign Animal Disease Research Unit, Plum Island Animal Disease Center, Orient, New York, USA.
Center of Excellence for African swine fever Genomics, Guilford, Connecticut, USA.
ORCID: 0000-0002-7894-0233

Classifications MeSH