The Genetic Selection of
Wuzhishan pigs
growth
heat shock proteins
inflammation
whole genome sequencing
Journal
Animals : an open access journal from MDPI
ISSN: 2076-2615
Titre abrégé: Animals (Basel)
Pays: Switzerland
ID NLM: 101635614
Informations de publication
Date de publication:
04 Jan 2024
04 Jan 2024
Historique:
received:
21
11
2023
revised:
25
12
2023
accepted:
29
12
2023
medline:
11
1
2024
pubmed:
11
1
2024
entrez:
11
1
2024
Statut:
epublish
Résumé
Wuzhishan (WZS) pigs, which are minipigs native to Hainan Province in China, are characterized by strong resistance to extreme hot temperatures and humidity. The relationship between their immune response and growth still needs to be clarified. In this study, we used whole genome sequencing (WGS) to detect variations within 37 WZS pigs, 32 Large White (LW) pigs, and 22 Xiangxi black (XXB) pigs, and ~2.49 GB of SNPs were obtained. These data were combined with those of two other pig breeds, and it was found that most of the genes detected (354) were located within the distinct genetic regions between WZS pigs and LW pigs. The network that was constructed using these genes represented a center including 12 hub genes, five of which had structural variations (SVs) within their regulatory regions. Furthermore, RNA-seq and RT-qPCR data for 12 genes were primarily consistent in liver, spleen, and LDM tissues. Notably, the expression of HSPs (
Identifiants
pubmed: 38200905
pii: ani14010174
doi: 10.3390/ani14010174
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : the National Key Research and Development Program of China
ID : 2022YFF1001300
Organisme : the National Key Research and Development Program of China
ID : 2021YFD1200802
Organisme : National Natural Science Foundation of China
ID : U22A20508
Organisme : State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences
ID : SKLVEB2021KFKT019
Organisme : Hainan Academy of Agricultural Sciences
ID : HAAS2023RCQD04