Accessing and utilizing clinical and genomic data from an electronic health record data warehouse.

Big data Data warehouse Electronic health record Genomics

Journal

Translational medicine communications
ISSN: 2396-832X
Titre abrégé: Transl Med Commun
Pays: England
ID NLM: 101738095

Informations de publication

Date de publication:
2023
Historique:
medline: 15 1 2024
pubmed: 15 1 2024
entrez: 15 1 2024
Statut: ppublish

Résumé

Electronic health records (EHRs) and linked biobanks have tremendous potential to advance biomedical research and ultimately improve the health of future generations. Repurposing EHR data for research is not without challenges, however. In this paper, we describe the processes and considerations necessary to successfully access and utilize a data warehouse for research. Although imperfect, data warehouses are a powerful tool for harnessing a large amount of data to phenotype disease. They will have increasing relevance and applications in clinical research with growing sophistication in processes for EHR data abstraction, biobank integration, and cross-institutional linkage.

Identifiants

pubmed: 38223535
doi: 10.1186/s41231-023-00140-0
pmc: PMC10786622
pii:
doi:

Types de publication

Journal Article

Langues

eng

Déclaration de conflit d'intérêts

Competing interests The authors declare that they have no competing interests.

Auteurs

Cosby G Arnold (CG)

Department of Emergency Medicine, School of Medicine, University of California, Davis, 4150 V Street #2100, Sacramento, CA 95817, USA.

Brandon Sonn (B)

Department of Emergency Medicine, University of Colorado Denver-Anschutz Medical Center, University of Colorado School of Medicine, Mail Stop B-215, 12401 East 17th Avenue, Aurora, CO 80045, USA.

Frederick J Meyers (FJ)

Department of Internal Medicine, University of California, Davis, School of Medicine, 4150 V Street #3100, Sacramento, CA 95817, USA.

Alexis Vest (A)

Department of Emergency Medicine, University of Colorado Denver-Anschutz Medical Center, University of Colorado School of Medicine, Mail Stop B-215, 12401 East 17th Avenue, Aurora, CO 80045, USA.

Richie Puls (R)

Department of Emergency Medicine, University of Colorado Denver-Anschutz Medical Center, University of Colorado School of Medicine, Mail Stop B-215, 12401 East 17th Avenue, Aurora, CO 80045, USA.

Estelle Zirkler (E)

Department of Biomedical Informatics, University of Colorado School of Medicine, Anschutz Health Sciences Building, 1890 N. Revere Court, Mailstop F600, Aurora, CO 80045, USA.

Michelle Edelmann (M)

Department of Biomedical Informatics, University of Colorado School of Medicine, Anschutz Health Sciences Building, 1890 N. Revere Court, Mailstop F600, Aurora, CO 80045, USA.

Ian M Brooks (IM)

Department of Biomedical Informatics, University of Colorado School of Medicine, Anschutz Health Sciences Building, 1890 N. Revere Court, Mailstop F600, Aurora, CO 80045, USA.

Andrew A Monte (AA)

Department of Emergency Medicine, School of Medicine, University of California, Davis, 4150 V Street #2100, Sacramento, CA 95817, USA.
Rocky Mountain Poison & Drug Center, Denver Health and Hospital Authority, 1391 Speer Blvd Unit 600, Denver, CO 80204, USA.

Classifications MeSH