Directed ultrafast conformational changes accompany electron transfer in a photolyase as resolved by serial crystallography.


Journal

Nature chemistry
ISSN: 1755-4349
Titre abrégé: Nat Chem
Pays: England
ID NLM: 101499734

Informations de publication

Date de publication:
15 Jan 2024
Historique:
received: 18 01 2023
accepted: 28 11 2023
medline: 16 1 2024
pubmed: 16 1 2024
entrez: 15 1 2024
Statut: aheadofprint

Résumé

Charge-transfer reactions in proteins are important for life, such as in photolyases which repair DNA, but the role of structural dynamics remains unclear. Here, using femtosecond X-ray crystallography, we report the structural changes that take place while electrons transfer along a chain of four conserved tryptophans in the Drosophila melanogaster (6-4) photolyase. At femto- and picosecond delays, photoreduction of the flavin by the first tryptophan causes directed structural responses at a key asparagine, at a conserved salt bridge, and by rearrangements of nearby water molecules. We detect charge-induced structural changes close to the second tryptophan from 1 ps to 20 ps, identifying a nearby methionine as an active participant in the redox chain, and from 20 ps around the fourth tryptophan. The photolyase undergoes highly directed and carefully timed adaptations of its structure. This questions the validity of the linear solvent response approximation in Marcus theory and indicates that evolution has optimized fast protein fluctuations for optimal charge transfer.

Identifiants

pubmed: 38225270
doi: 10.1038/s41557-023-01413-9
pii: 10.1038/s41557-023-01413-9
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© 2024. The Author(s).

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Auteurs

Andrea Cellini (A)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.

Madan Kumar Shankar (MK)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden.

Amke Nimmrich (A)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Department of Chemistry, University of Washington, Seattle, WA, USA.

Leigh Anna Hunt (LA)

Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden.

Leonardo Monrroy (L)

Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden.

Jennifer Mutisya (J)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden.

Antonia Furrer (A)

Paul Scherrer Institut, Villigen, Switzerland.

Emma V Beale (EV)

Paul Scherrer Institut, Villigen, Switzerland.

Melissa Carrillo (M)

Paul Scherrer Institut, Villigen, Switzerland.

Tek Narsingh Malla (TN)

Physics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.

Piotr Maj (P)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden.

Lidija Vrhovac (L)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden.

Florian Dworkowski (F)

Paul Scherrer Institut, Villigen, Switzerland.

Claudio Cirelli (C)

Paul Scherrer Institut, Villigen, Switzerland.

Philip J M Johnson (PJM)

Paul Scherrer Institut, Villigen, Switzerland.

Dmitry Ozerov (D)

Paul Scherrer Institut, Villigen, Switzerland.

Emina A Stojković (EA)

Department of Biology, Northeastern Illinois University, Chicago, IL, USA.

Leif Hammarström (L)

Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden.

Camila Bacellar (C)

Paul Scherrer Institut, Villigen, Switzerland.

Jörg Standfuss (J)

Paul Scherrer Institut, Villigen, Switzerland.

Michał Maj (M)

Department of Chemistry - Ångström Laboratory, Uppsala University, Uppsala, Sweden.

Marius Schmidt (M)

Physics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.

Tobias Weinert (T)

Paul Scherrer Institut, Villigen, Switzerland.

Janne A Ihalainen (JA)

Department of Biological and Environmental Sciences, Nanoscience Center, University of Jyvaskyla, Jyvaskyla, Finland.

Weixiao Yuan Wahlgren (WY)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
Department of Chemistry and Molecular Biology and the Swedish NMR Centre, University of Gothenburg, Gothenburg, Sweden.

Sebastian Westenhoff (S)

Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden. sebastian.westenhoff@kemi.uu.se.
Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden. sebastian.westenhoff@kemi.uu.se.

Classifications MeSH