Effects of environmental parameters on spatial and temporal distribution of marine microbial communities in the southern Black Sea.

16S rRNA ASV Microbial community Microbial diversity eDNA

Journal

Marine environmental research
ISSN: 1879-0291
Titre abrégé: Mar Environ Res
Pays: England
ID NLM: 9882895

Informations de publication

Date de publication:
08 Jan 2024
Historique:
received: 11 05 2023
revised: 27 12 2023
accepted: 07 01 2024
medline: 18 1 2024
pubmed: 18 1 2024
entrez: 17 1 2024
Statut: aheadofprint

Résumé

The Black Sea is a unique environment with strong and permanent vertical stratification, with a thin layer of oxic zone above and a permanent anoxic zone below. Few high-throughput genomic surveys have been conducted to examine microbiota in the Black Sea. Yet, there is no study on the seasonal and vertical variation in microbial community compositions, driving forces and mechanisms of community assembly. In this study, seasonal, vertical, and spatial microbial assemblages were studied in terms of diversity, abundance, and community structure using 16S rRNA metabarcoding. 16S rRNA metabarcoding confirmed seasonal changes in microbial communities and the presence of distinct microbial groups among different water layers. Taxa belonging to Cyanobiaceae contributed a large fraction of the total biomass and were the most abundant autotrophic bacteria found across the whole water column, including hydrogen sulfide-containing anoxic zone. Temperature, salinity, water density, conductivity, light, chlorophyll-a, O

Identifiants

pubmed: 38232435
pii: S0141-1136(24)00005-9
doi: 10.1016/j.marenvres.2024.106344
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

106344

Informations de copyright

Copyright © 2024 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Rafet Cagri Ozturk (R)

Department of Fisheries Technology Engineering, Faculty of Marine Sciences, Karadeniz Technical University, 61530, Trabzon, Türkiye; Aquatic Animal Health and Molecular Genetics (AQUANETIC) Lab, Department of Chemistry C Block, 61080, Ortahisar, Trabzon, Türkiye. Electronic address: rafetcagriozturk@gmail.com.

Ali Muzaffer Feyzioglu (AM)

Department of Marine Science and Technology, Faculty of Marine Science, Karadeniz Technical University, 61530, Trabzon, Türkiye. Electronic address: mufeyzioglu@gmail.com.

Erol Capkin (E)

Department of Fisheries Technology Engineering, Faculty of Marine Sciences, Karadeniz Technical University, 61530, Trabzon, Türkiye. Electronic address: ecapkin@ktu.edu.tr.

Ilknur Yildiz (I)

Institute of Marine Sciences and Technology, Karadeniz Technical University, 61080, Trabzon, Türkiye. Electronic address: ilknurk@ktu.edu.tr.

Ilhan Altinok (I)

Department of Fisheries Technology Engineering, Faculty of Marine Sciences, Karadeniz Technical University, 61530, Trabzon, Türkiye; Aquatic Animal Health and Molecular Genetics (AQUANETIC) Lab, Department of Chemistry C Block, 61080, Ortahisar, Trabzon, Türkiye; Institute of Marine Sciences and Technology, Karadeniz Technical University, 61080, Trabzon, Türkiye. Electronic address: ialtinok@ktu.edu.tr.

Classifications MeSH