Whole genome sequencing followed by functional analysis of genomic deletion encompassing ERCC8 and NDUFAF2 genes in a non-consanguineous Indian family reveals dysfunctional mitochondrial bioenergetics leading to infant mortality.

Carrier screening Deletion Leigh syndrome Mitochondrial disorder Whole genome sequencing

Journal

Mitochondrion
ISSN: 1872-8278
Titre abrégé: Mitochondrion
Pays: Netherlands
ID NLM: 100968751

Informations de publication

Date de publication:
16 Jan 2024
Historique:
received: 04 02 2023
revised: 07 12 2023
accepted: 14 01 2024
medline: 19 1 2024
pubmed: 19 1 2024
entrez: 18 1 2024
Statut: aheadofprint

Résumé

Genomic investigations on an infant who presented with a putative mitochondrial disorder led to identification of compound heterozygous deletion with an overlapping region of ∼142kb encompassing two nuclear encoded genes namely ERCC8 and NDUFAF2. Investigations on fetal-derived fibroblast culture demonstrated impaired bioenergetics and mitochondrial dysfunction, which explains the phenotype and observed infant mortality in the present study. The genetic findings from this study extended the utility of whole-genome sequencing as it led to development of a MLPA-based assay for carrier screening in the extended family and the prenatal testing aiding in the birth of two healthy children.

Identifiants

pubmed: 38237647
pii: S1567-7249(24)00002-3
doi: 10.1016/j.mito.2024.101844
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

101844

Informations de copyright

Copyright © 2024. Published by Elsevier B.V.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Ankit Sabharwal (A)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India; Department of Pediatrics, Dell Medical School, The University of Texas, Austin, Texas. Electronic address: ankit.sabharwal@austin.utexas.edu.

Vishu Gupta (V)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.

Shamsudheen Kv (S)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

Ranjith Kumar Manokaran (R)

Department of Pediatrics, All India Institute of Medical Sciences (AIIMS), Delhi, India.

Ankit Verma (A)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

Anushree Mishra (A)

Department of Pediatrics, All India Institute of Medical Sciences (AIIMS), Delhi, India.

Rahul C Bhoyar (RC)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

Abhinav Jain (A)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.

Ambily Sivadas (A)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.

Sonali Rawat (S)

Stem Cell Facility, All India Institute of Medical Sciences (AIIMS), Delhi, India.

Bani Jolly (B)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.

Sujata Mohanty (S)

Stem Cell Facility, All India Institute of Medical Sciences (AIIMS), Delhi, India.

Sheffali Gulati (S)

Department of Pediatrics, All India Institute of Medical Sciences (AIIMS), Delhi, India.

Neerja Gupta (N)

Department of Pediatrics, All India Institute of Medical Sciences (AIIMS), Delhi, India.

Madhulika Kabra (M)

Department of Pediatrics, All India Institute of Medical Sciences (AIIMS), Delhi, India. Electronic address: madhulikakabra@hotmail.com.

Vinod Scaria (V)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India. Electronic address: vinods@igib.in.

Sridhar Sivasubbu (S)

Genomics And Molecular Medicine Unit, CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India. Electronic address: sridhar@igib.in.

Classifications MeSH