Lightweight Techniques to Improve Generalization and Robustness of U-Net Based Networks for Pulmonary Lobe Segmentation.

CT artificial intelligence attention computer vision deep learning lung thorax segmentation self-supervised learning

Journal

Bioengineering (Basel, Switzerland)
ISSN: 2306-5354
Titre abrégé: Bioengineering (Basel)
Pays: Switzerland
ID NLM: 101676056

Informations de publication

Date de publication:
25 Dec 2023
Historique:
received: 16 11 2023
revised: 10 12 2023
accepted: 14 12 2023
medline: 22 1 2024
pubmed: 22 1 2024
entrez: 22 1 2024
Statut: epublish

Résumé

Lung lobe segmentation in chest CT is relevant to a wide range of clinical applications. However, existing segmentation pipelines often exhibit vulnerabilities and performance degradations when applied to external datasets. This is usually attributed to the size of the available dataset or model. We show that it is possible to enhance generalizability without huge resources by carefully curating the dataset and combining machine learning with medical expertise. Multiple machine learning techniques (self-supervision (SSL), attention (A), and data augmentation (DA)) are used to train a fast and fully-automated lung lobe segmentation model based on 2D U-Net. Our study involved evaluating these techniques on a diverse dataset collected under the RACOON project, encompassing 100 CT chest scans from patients with bacterial, viral, or SARS-CoV2 infections. We compare our model to a baseline U-Net trained on the same dataset. Our approach significantly improved segmentation accuracy (Dice score of 92.8% vs. 82.3%,

Identifiants

pubmed: 38247898
pii: bioengineering11010021
doi: 10.3390/bioengineering11010021
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : Federal Ministry of Education and Research
ID : Funded by "NUM 2.0" (FKZ: 01KX2121)"

Auteurs

Armin A Dadras (AA)

Division of Phoniatrics-Logopedics, Department of Otorhinolaryngology, Medical University of Vienna, Währinger Gürtel 18-20, 1090 Vienna, Austria.

Achref Jaziri (A)

Center for Cognition and Computation, Goethe University Frankfurt, Robert Meyer Str. 10-12, 60323 Frankfurt am Main, Germany.

Eric Frodl (E)

Institute for Diagnostic and Interventional Radiology, University Hospital, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany.

Thomas J Vogl (TJ)

Institute for Diagnostic and Interventional Radiology, University Hospital, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany.

Julia Dietz (J)

Institute for Diagnostic and Interventional Radiology, University Hospital, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany.
Department of Medicine, Medical Clinic 1, University Hospital, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany.

Andreas M Bucher (AM)

Institute for Diagnostic and Interventional Radiology, University Hospital, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany.

Classifications MeSH