Lignocellulolytic Potential of Microbial Consortia Isolated from a Local Biogas Plant: The Case of Thermostable Xylanases Secreted by Mesophilic Bacteria.

biomass conversion biorefineries carbohydrate-active enzymes metagenomic analyses microbial diversity microbiome dynamics microbiomes spent mushroom substrate thermal analysis total carbohydrate analysis

Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
16 Jan 2024
Historique:
received: 07 12 2023
revised: 05 01 2024
accepted: 12 01 2024
medline: 23 1 2024
pubmed: 23 1 2024
entrez: 23 1 2024
Statut: epublish

Résumé

Lignocellulose biomasses (LCB), including spent mushroom substrate (SMS), pose environmental challenges if not properly managed. At the same time, these renewable resources hold immense potential for biofuel and chemicals production. With the mushroom market growth expected to amplify SMS quantities, repurposing or disposal strategies are critical. This study explores the use of SMS for cultivating microbial communities to produce carbohydrate-active enzymes (CAZymes). Addressing a research gap in using anaerobic digesters for enriching microbiomes feeding on SMS, this study investigates microbial diversity and secreted CAZymes under varied temperatures (37 °C, 50 °C, and 70 °C) and substrates (SMS as well as pure carboxymethylcellulose, and xylan). Enriched microbiomes demonstrated temperature-dependent preferences for cellulose, hemicellulose, and lignin degradation, supported by thermal and elemental analyses. Enzyme assays confirmed lignocellulolytic enzyme secretion correlating with substrate degradation trends. Notably, thermogravimetric analysis (TGA), coupled with differential scanning calorimetry (TGA-DSC), emerged as a rapid approach for saccharification potential determination of LCB. Microbiomes isolated at mesophilic temperature secreted thermophilic hemicellulases exhibiting robust stability and superior enzymatic activity compared to commercial enzymes, aligning with biorefinery conditions. PCR-DGGE and metagenomic analyses showcased dynamic shifts in microbiome composition and functional potential based on environmental conditions, impacting CAZyme abundance and diversity. The meta-functional analysis emphasised the role of CAZymes in biomass transformation, indicating microbial strategies for lignocellulose degradation. Temperature and substrate specificity influenced the degradative potential, highlighting the complexity of environmental-microbial interactions. This study demonstrates a temperature-driven microbial selection for lignocellulose degradation, unveiling thermophilic xylanases with industrial promise. Insights gained contribute to optimizing enzyme production and formulating efficient biomass conversion strategies. Understanding microbial consortia responses to temperature and substrate variations elucidates bioconversion dynamics, emphasizing tailored strategies for harnessing their biotechnological potential.

Identifiants

pubmed: 38256164
pii: ijms25021090
doi: 10.3390/ijms25021090
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : MUR - Italian Ministry of University and Research
ID : CUP B31I18000230006
Organisme : NextGenerationEU - European Union
ID : CUP B33C22000660001

Auteurs

Luca Bombardi (L)

Biochemistry and Industrial Biotechnology (BIB) Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Andrea Salini (A)

Biochemistry and Industrial Biotechnology (BIB) Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Martina Aulitto (M)

Department of Biology, University of Naples Federico II, 80126 Naples, Italy.

Luca Zuliani (L)

Biochemistry and Industrial Biotechnology (BIB) Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Marco Andreolli (M)

Lab of Environmental Microbiology & VUCC-DBT Verona University Culture Collection, Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Paola Bordoli (P)

Biochemistry and Industrial Biotechnology (BIB) Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Annalaura Coltro (A)

Biochemistry and Industrial Biotechnology (BIB) Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Nicola Vitulo (N)

Computational Genomics Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Claudio Zaccone (C)

Lab of Soil and Biomass Chemistry, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Silvia Lampis (S)

Lab of Environmental Microbiology & VUCC-DBT Verona University Culture Collection, Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Salvatore Fusco (S)

Biochemistry and Industrial Biotechnology (BIB) Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.

Classifications MeSH