Multicentric Study on the Clinical Mycology Capacity and Access to Antifungal Treatment in Portugal.

Antifungals Clinical mycology Diagnosis Invasive fungal disease Portugal Therapy

Journal

Mycopathologia
ISSN: 1573-0832
Titre abrégé: Mycopathologia
Pays: Netherlands
ID NLM: 7505689

Informations de publication

Date de publication:
24 Jan 2024
Historique:
received: 19 10 2023
accepted: 04 01 2024
medline: 24 1 2024
pubmed: 24 1 2024
entrez: 24 1 2024
Statut: epublish

Résumé

The success of the clinical management of invasive fungal diseases (IFD) is highly dependent on suitable tools for timely and accurate diagnosis for effective treatment. An in-depth analysis of the ability of European institutions to promptly and accurately diagnose IFD was previously conducted to identify limitations and aspects to improve. Here, we evaluated and discussed the specific case of Portugal, for which, to our knowledge, there are no reports describing the national mycological diagnostic capacity and access to antifungal treatment. Data from 16 Portuguese medical institutions were collected via an online electronic case report form covering different parameters, including institution profile, self-perceived IFD incidence, target patients, diagnostic methods and reagents, and available antifungals. The majority of participating institutions (69%) reported a low-very low incidence of IFD, with Candida spp. indicated as the most relevant fungal pathogen, followed by Aspergillus spp. and Cryptococcus spp. All institutions had access to culture and microscopy, whereas 94 and 88% were able to run antigen-detection assays and molecular tests, respectively. All of the institutions capable of providing antifungal therapy declared to have access to at least one antifungal. However, echinocandins were only available at 85% of the sites. Therapeutic drug monitoring (TDM) was reported to remain a very restricted practice in Portugal, being available in 19% of the institutions, with the TDM of itraconazole and posaconazole performed in only 6% of them. Importantly, several of these resources are outsourced to external entities. Except for TDM, Portugal appears to be well-prepared concerning the overall capacity to diagnose and treat IFD. Future efforts should focus on promoting the widespread availability of TDM and improved access to multiple classes of antifungals, to further improve patient outcomes.

Identifiants

pubmed: 38265528
doi: 10.1007/s11046-024-00830-9
pii: 10.1007/s11046-024-00830-9
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

15

Subventions

Organisme : Fundação para a Ciência e a Tecnologia
ID : CEECIND/04058/2018
Organisme : Fundação para a Ciência e a Tecnologia
ID : 2022.12062.BD

Investigateurs

Joana Batista (J)
Dinah Carvalho (D)
Adriana Coutinho (A)
Flávia Cunha (F)
Augusta Gonçalves (A)
Catarina Gouveia (C)
António Guerra Maio (A)
Augusto Machado E Costa (A)
Dolores Pinheiro (D)
Pedro Póvoa (P)
Elmano Ramalheira (E)
Valentina Santos (V)
Ana Cristina Silva (AC)
Zélia Videira (Z)

Informations de copyright

© 2024. The Author(s).

Références

Arastehfar A, Carvalho A, Houbraken J, Lombardi L, Garcia-Rubio R, Jenks JD, et al. Aspergillus fumigatus and aspergillosis: from basics to clinics. Stud Mycol. 2021;100:100115.
pubmed: 34035866 pmcid: 8131930
Bongomin F, Gago S, Oladele RO, Denning DW. Global and multi-national prevalence of fungal diseases-estimate precision. J Fungi (Basel). 2017;3(4):57.
pubmed: 29371573
Rodrigues ML, Nosanchuk JD. Fungal diseases as neglected pathogens: a wake-up call to public health officials. PLoS Negl Trop Dis. 2020;14(2):e0007964.
pubmed: 32078635 pmcid: 7032689
Benedict K, Jackson BR, Chiller T, Beer KD. Estimation of direct healthcare costs of fungal diseases in the United States. Clin Infect Dis. 2018;68(11):1791–7.
Cole DC, Govender NP, Chakrabarti A, Sacarlal J, Denning DW. Improvement of fungal disease identification and management: combined health systems and public health approaches. Lancet Infect Dis. 2017;17(12):e412–9.
pubmed: 28774694
Lockhart SR, Guarner J. Emerging and reemerging fungal infections. Semin Diagn Pathol. 2019;36(3):177–81.
pubmed: 31010605
Friedman DZP, Schwartz IS. Emerging fungal infections: new patients, new patterns, and new pathogens. J Fungi (Basel). 2019;5(3):67.
pubmed: 31330862
Lewis RE, Cahyame-Zuniga L, Leventakos K, Chamilos G, Ben-Ami R, Tamboli P, et al. Epidemiology and sites of involvement of invasive fungal infections in patients with haematological malignancies: a 20-year autopsy study. Mycoses. 2013;56(6):638–45.
pubmed: 23551865
Salmanton-García J, Sprute R, Stemler J, Bartoletti M, Dupont D, Valerio M, et al. COVID-19-associated pulmonary aspergillosis, March-August 2020. Emerg Infect Dis. 2021;27(4):1077–86.
pubmed: 33539721 pmcid: 8007287
Hoenigl M, Seidel D, Sprute R, Cunha C, Oliverio M, Goldman GH, et al. COVID-19-associated fungal infections. Nat Microbiol. 2022;7(8):1127–40.
pubmed: 35918423 pmcid: 9362108
Hoenigl M, Seidel D, Carvalho A, Rudramurthy SM, Arastehfar A, Gangneux JP, et al. The emergence of COVID-19 associated mucormycosis: a review of cases from 18 countries. Lancet Microbe. 2022;3(7):e543–52.
pubmed: 35098179 pmcid: 8789240
Verweij PE, Rijnders BJA, Bruggemann RJM, Azoulay E, Bassetti M, Blot S, et al. Review of influenza-associated pulmonary aspergillosis in ICU patients and proposal for a case definition: an expert opinion. Intensive Care Med. 2020;46(8):1524–35.
pubmed: 32572532 pmcid: 7306567
Almeida-Paes R, Bernardes-Engemann AR, da Silva MB, Pizzini CV, de Abreu AM, de Medeiros MM, et al. Immunologic diagnosis of endemic mycoses. J Fungi (Basel). 2022;8(10):993.
pubmed: 36294558
Veríssimo C, Toscano C, Ferreira T, Abreu G, Simões H, Diogo J, et al. Invasive and subcutaneous infections caused by filamentous fungi: report from a portuguese multicentric surveillance program. Microorganisms. 2022;10(5):1010.
pubmed: 35630453 pmcid: 9145964
Sabino R, Verissímo C, Brandão J, Martins C, Alves D, Pais C, et al. Serious fungal infections in Portugal. Eur J Clin Microbiol Infect Dis. 2017;36(7):1345–52.
pubmed: 28188492
Zhang H, Zhu A. Emerging invasive fungal infections: clinical features and controversies in diagnosis and treatment processes. Infect Drug Resist. 2020;13:607–15.
pubmed: 32110071 pmcid: 7039084
Máiz L, Nieto R, Cantón R, de la Gómez G, Pedrosa E, Martinez-García MÁ. Fungi in bronchiectasis: a concise review. Int J Mol Sci. 2018;19(1):142.
pubmed: 29300314 pmcid: 5796091
Fang W, Wu J, Cheng M, Zhu X, Du M, Chen C, et al. Diagnosis of invasive fungal infections: challenges and recent developments. J Biomed Sci. 2023;30(1):42.
pubmed: 37337179 pmcid: 10278348
Salmanton-García J, Hoenigl M, Gangneux JP, Segal E, Alastruey-Izquierdo A, Arikan Akdagli S, et al. The current state of laboratory mycology and access to antifungal treatment in Europe: a European Confederation of Medical Mycology survey. Lancet Microbe. 2023;4(1):e47–56.
pubmed: 36463916
Vena A, Bassetti M, Mezzogori L, Marchesi F, Hoenigl M, Giacobbe DR, et al. Laboratory and clinical management capacity for invasive fungal infections: the Italian landscape. Infection. 2023. https://doi.org/10.1007/s15010-023-02084-x .
doi: 10.1007/s15010-023-02084-x pubmed: 37656348
Riera F, Caeiro JP, Cornely OA, Salmanton-García J. The Argentinian landscape of mycological diagnostic capacity and treatment accessibility. Med Mycol. 2023;61(6):myad058.
pubmed: 37312404 pmcid: 10313093
Estatística INd. Instituto Nacional de Estatística - Censos 2021. XVI Recenseamento Geral da População. VI Recenseamento Geral da Habitação : Resultados definitivos. Lisboa: INE 2022. https://www.ine.pt/xurl/pub/65586079 . ISSN 0872–6493. ISBN 978-989-25-0619-72021.
Estatística INd. Estatísticas da Saúde: 2021. https://www.ine.pt/xurl/pub/11677508 ISSN 2183-1637. ISBN 978-989-25-0599-2: INE 2023.
Hammond EE, McDonald CS, Vestbo J, Denning DW. The global impact of Aspergillus infection on COPD. BMC Pulm Med. 2020;20(1):241.
pubmed: 32912168 pmcid: 7488557
Moss RB. Treatment options in severe fungal asthma and allergic bronchopulmonary aspergillosis. Eur Respir J. 2014;43(5):1487–500.
pubmed: 24311776
OECD, European Union. Health at a Glance: Europe 2022.
WHO. WHO fungal priority pathogens list to guide research, development and public health action. World Health Organization (WHO). 2022. https://www.who.int/publications/i/item/9789240060241 .
Salmanton-García J, Hoenigl M, Salzer HJF, Lackner M, Prattes J, Dichtl K, et al. The Austrian landscape of diagnostic capacity and access to treatment for invasive fungal infections. Mycoses. 2023;66(12):1056–63.
pubmed: 37592370
Salmanton-García J, Au WY, Hoenigl M, Chai LYA, Badali H, Basher A, et al. The current state of laboratory mycology in Asia/Pacific: A survey from the European Confederation of Medical Mycology (ECMM) and International Society for Human and Animal Mycology (ISHAM). Int J Antimicrob Agents. 2023;61(3):106718.
pubmed: 36640851
Driemeyer C, Falci DR, Oladele RO, Bongomin F, Ocansey BK, Govender NP, et al. The current state of clinical mycology in Africa: a European Confederation of Medical Mycology and International Society for Human and Animal Mycology survey. Lancet Microbe. 2022;3(6):e464–70.
pubmed: 35659908
Pagano L, Caira M, Candoni A, Offidani M, Fianchi L, Martino B, et al. The epidemiology of fungal infections in patients with hematologic malignancies: the SEIFEM-2004 study. Haematologica. 2006;91(8):1068–75.
pubmed: 16885047
Lass-Flörl C. The changing face of epidemiology of invasive fungal disease in Europe. Mycoses. 2009;52(3):197–205.
pubmed: 19391253
Rodriguez-Tudela JL, Alastruey-Izquierdo A, Gago S, Cuenca-Estrella M, León C, Miro JM, et al. Burden of serious fungal infections in Spain. Clin Microbiol Infect. 2015;21(2):183–9.
pubmed: 25658565
Lagrou K, Maertens J, Van Even E, Denning DW. Burden of serious fungal infections in Belgium. Mycoses. 2015;58(S5):1–5.
pubmed: 26449500
Chrdle A, Na M, Vašáková M, Haber J, Denning DW. Burden of serious fungal infections in the Czech Republic. Mycoses. 2015;58(S5):6–14.
pubmed: 26449501
Camacho I, Leça R, Sardinha D, Fernandez M, Camacho R. Drivers of Fusarium dispersion in Madeira Archipelago (Portugal). Summa Phytopathol. 2022;48(1):9–16.
Zakaria L. Fusarium species associated with diseases of major tropical fruit crops. Horticulturae. 2023;9(3):322.
Nucci M, Anaissie E. Invasive fusariosis. Clin Microbiol Rev. 2023;36(4):e00159-e222.
pubmed: 37937988 pmcid: 10732078
Cardoso JC. Immigration to Portugal. J Immigr Refug Stud. 2007;4(4):3–18.
Zhao Y, Ye L, Zhao F, Zhang L, Lu Z, Chu T, et al. Cryptococcus neoformans, a global threat to human health. Infect Dis Poverty. 2023;12(1):20.
pubmed: 36932414 pmcid: 10020775
Vianna CMM, Mosegui GBG. Cost-effectiveness analysis of the implementation of Cryptococcal Antigen lateral flow assay for the diagnosis of Cryptococcal Meningitis in symptomatic people living with human immunodeficiency virus in Brazil. Value Health Reg Issues. 2022;29:53–9.
pubmed: 34801886
Cornely OA, Alastruey-Izquierdo A, Arenz D, Chen SCA, Dannaoui E, Hochhegger B, et al. Global guideline for the diagnosis and management of mucormycosis: an initiative of the European Confederation of Medical Mycology in cooperation with the Mycoses Study Group Education and Research Consortium. Lancet Infect Dis. 2019;19(12):e405–21.
pubmed: 31699664 pmcid: 8559573
Prakash R, Prashanth HV, Ragunatha S, Kapoor M, Anitha TK, Krishnamurthy V. Comparative study of efficacy, rapidity of detection, and cost-effectiveness of potassium hydroxide, calcofluor white, and Chicago sky blue stains in the diagnosis of dermatophytoses. Int J Dermatol. 2016;55(4):e172–5.
pubmed: 26861859
Ullmann AJ, Aguado JM, Arikan-Akdagli S, Denning DW, Groll AH, Lagrou K, et al. Diagnosis and management of Aspergillus diseases: executive summary of the 2017 ESCMID-ECMM-ERS guideline. Clin Microbiol Infect. 2018;24(Suppl 1):e1–38.
pubmed: 29544767
Rodríguez-Sánchez B, Cercenado E, Coste AT, Greub G. Review of the impact of MALDI-TOF MS in public health and hospital hygiene, 2018. Euro Surveill. 2019;24(4):1800193.
pubmed: 30696525 pmcid: 6351997
Powerhouse HC. Euro Health Consumer Index 2018.
Falci DR, Pasqualotto AC. Clinical mycology in Latin America and the Caribbean: a snapshot of diagnostic and therapeutic capabilities. Mycoses. 2019;62(4):368–73.
pubmed: 30614600
da Manuel SAM, Cruz L, Pina-Vaz C, Gonçalves-Rodrigues A. An overview about the medical use of antifungals in Portugal in the last years. J Public Health Policy. 2016;37(2):200–15.
Pinto E, Monteiro C, Maia M, Faria MA, Lopes V, Lameiras C, et al. Aspergillus species and antifungals susceptibility in clinical setting in the North of Portugal: cryptic species and emerging azoles resistance in A. fumigatus. Front Microbiol. 2018;9:1656.
pubmed: 30083151 pmcid: 6065200
Gonçalves P, Melo A, Dias M, Almeida B, Caetano LA, Veríssimo C, et al. Azole-resistant Aspergillus fumigatus Harboring the TR(34)/L98H mutation: first report in Portugal in environmental samples. Microorganisms. 2020;9(1):57.
pubmed: 33379247 pmcid: 7823791
Faria-Ramos I, Farinha S, Neves-Maia J, Tavares PR, Miranda IM, Estevinho LM, et al. Development of cross-resistance by Aspergillus fumigatus to clinical azoles following exposure to prochloraz, an agricultural azole. BMC Microbiol. 2014;14(1):155.
pubmed: 24920078 pmcid: 4061453
Jørgensen LN, Heick TM. Azole use in agriculture, horticulture, and wood preservation—Is it indispensable? Front Cell Infect Microbiol. 2021;11:730297.
pubmed: 34557427 pmcid: 8453013
Berger S, El Chazli Y, Babu AF, Coste AT. Azole resistance in Aspergillus fumigatus: a consequence of antifungal use in agriculture? Front Microbiol. 2017;8:1024.
pubmed: 28638374 pmcid: 5461301
WHO. WHO. World Health Organization model list of essential in vitro diagnostics 2021. https://www.who.int/publications/i/item/9789240019102 .
Sprute R, Duda S, Liekweg A, Simon M, Cornely OA. The silent flucytosine shortage in Europe—not a distant problem. Lancet Reg Health Eur. 2023;30:100658.
pubmed: 37293188 pmcid: 10245318
McCreary EK, Davis MR, Narayanan N, Andes DR, Cattaneo D, Christian R, et al. Utility of triazole antifungal therapeutic drug monitoring: Insights from the Society of Infectious Diseases Pharmacists: Endorsed by the Mycoses Study Group Education and Research Consortium. Pharmacotherapy. 2023;43(10):1043–50.
pubmed: 37459118

Auteurs

Raquel Fernandes (R)

Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
ICVS/3B's - PT Government Associate Laboratory, Braga, Guimarães, Portugal.

Raquel Sabino (R)

Reference Unit for Parasitic and Fungal Infections, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge (INSA), Lisbon, Portugal.
Faculdade de Medicina, Instituto de Saúde Ambiental, Universidade de Lisboa, Lisbon, Portugal.
Laboratório Associado TERRA-Laboratório para o Uso Sustentável da Terra e dos Serviços dos Ecossistemas, Instituto Superior de Agronomia, Lisbon, Portugal.

Cristina Cunha (C)

Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.
ICVS/3B's - PT Government Associate Laboratory, Braga, Guimarães, Portugal.

Oliver A Cornely (OA)

Faculty of Medicine and University Hospital Cologne, Institute of Translational Research, Cologne Excellence Cluster On Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Herderstr. 52, 50931, Cologne, Germany.
Faculty of Medicine and University Hospital Cologne, Department I of Internal Medicine, Center for Integrated Oncology Aachen Bonn Cologne Duesseldorf (CIO ABCD) and Excellence Center for Medical Mycology (ECMM), University of Cologne, Cologne, Germany.
German Centre for Infection Research (DZIF), Partner Site Bonn-Cologne, Cologne, Germany.
Faculty of Medicine and University Hospital Cologne, Clinical Trials Centre Cologne (ZKS Köln), University of Cologne, Cologne, Germany.

Agostinho Carvalho (A)

Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal. agostinhocarvalho@med.uminho.pt.
ICVS/3B's - PT Government Associate Laboratory, Braga, Guimarães, Portugal. agostinhocarvalho@med.uminho.pt.

Jon Salmanton-García (J)

Faculty of Medicine and University Hospital Cologne, Institute of Translational Research, Cologne Excellence Cluster On Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Herderstr. 52, 50931, Cologne, Germany. jon.salmanton-garcia@uk-koeln.de.
Faculty of Medicine and University Hospital Cologne, Department I of Internal Medicine, Center for Integrated Oncology Aachen Bonn Cologne Duesseldorf (CIO ABCD) and Excellence Center for Medical Mycology (ECMM), University of Cologne, Cologne, Germany. jon.salmanton-garcia@uk-koeln.de.
German Centre for Infection Research (DZIF), Partner Site Bonn-Cologne, Cologne, Germany. jon.salmanton-garcia@uk-koeln.de.

Classifications MeSH