Characterizing the bacterial communities associated with Mediterranean sponges: a metataxonomic analysis.

bacteria metataxonomic analysis molecular identification morphological identification sponges

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2023
Historique:
received: 02 10 2023
accepted: 20 12 2023
medline: 26 1 2024
pubmed: 26 1 2024
entrez: 26 1 2024
Statut: epublish

Résumé

The oceans cover over 70% of our planet, hosting a biodiversity of tremendous wealth. Sponges are one of the major ecosystem engineers on the seafloor, providing a habitat for a wide variety of species to be considered a good source of bioactive compounds. In this study, a metataxonomic approach was employed to describe the bacterial communities of the sponges collected from Faro Lake (Sicily) and Porto Paone (Gulf of Naples). Morphological analysis and amplification of the conserved molecular markers, including 18S and 28S (RNA ribosomal genes), CO1 (mitochondrial cytochrome oxidase subunit 1), and ITS (internal transcribed spacer), allowed the identification of four sponges. Metataxonomic analysis of sponges revealed a large number of amplicon sequence variants (ASVs) belonging to the phyla Proteobacteria, Cloroflexi, Dadabacteria, and Poribacteria. In particular,

Identifiants

pubmed: 38274771
doi: 10.3389/fmicb.2023.1295459
pmc: PMC10808595
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1295459

Informations de copyright

Copyright © 2024 Esposito, Federico, Sonnessa, Reddel, Bertolino, Ruocco, Zagami, Giovine, Pozzolini, Guida, Zupo and Costantini.

Déclaration de conflit d'intérêts

MS and SR were employed by Bio-Fab Research Srl. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.

Auteurs

Roberta Esposito (R)

Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Napoli, Italy.

Serena Federico (S)

Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Napoli, Italy.
Department of Earth, Environmental and Life Sciences, University of Genoa, Genoa, Italy.

Michele Sonnessa (M)

Bio-Fab Research Srl, Rome, Italy.

Sofia Reddel (S)

Bio-Fab Research Srl, Rome, Italy.

Marco Bertolino (M)

Department of Earth, Environmental and Life Sciences, University of Genoa, Genoa, Italy.

Nadia Ruocco (N)

Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Calabria Marine Centre, Amendolara, Italy.

Giacomo Zagami (G)

Dipartimento Di Scienze Biologiche, Chimiche, Farmaceutiche Ed Ambientali, Università Di Messina, Messina, Italy.

Marco Giovine (M)

Department of Earth, Environmental and Life Sciences, University of Genoa, Genoa, Italy.

Marina Pozzolini (M)

Department of Earth, Environmental and Life Sciences, University of Genoa, Genoa, Italy.

Marco Guida (M)

Department of Biology, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, Naples, Italy.

Valerio Zupo (V)

Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Ischia Marine Centre, Naples, Italy.

Maria Costantini (M)

Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Napoli, Italy.

Classifications MeSH