A pathogenic variant in RAB32 causes autosomal dominant Parkinson's disease and activates LRRK2 kinase.

LRRK2 PINK1 Parkinson’s disease RAB32

Journal

medRxiv : the preprint server for health sciences
Titre abrégé: medRxiv
Pays: United States
ID NLM: 101767986

Informations de publication

Date de publication:
18 Jan 2024
Historique:
pubmed: 31 1 2024
medline: 31 1 2024
entrez: 31 1 2024
Statut: epublish

Résumé

Parkinson's disease (PD) is a progressive neurodegenerative disorder. Mendelian forms have revealed multiple genes, with a notable emphasis on membrane trafficking; RAB GTPases play an important role in PD as a subset are both regulators and substrates of LRRK2 protein kinase. To explore the role of RAB GTPases in PD, we undertook a comprehensive examination of their genetic variability in familial PD. Affected probands from 130 multi-incident PD families underwent whole-exome sequencing and genotyping, Potential pathogenic variants in 61 RAB GTPases were genotyped in relatives to assess disease segregation. These variants were also genotyped in a larger case-control series, totaling 3,078 individuals (2,734 with PD). The single most significant finding was subsequently validated within genetic data (6,043 with PD). Clinical and pathologic findings were summarized for gene-identified patients, and haplotypes were constructed. In parallel, wild-type and mutant RAB GTPase structural variation, protein interactions, and resultant enzyme activities were assessed. We found Our study provides unequivocal evidence to implicate RAB32 Ser71Arg in PD. Functional analysis demonstrates LRRK2 kinase activation. We provide a mechanistic explanation to expand and unify the etiopathogenesis of monogenic PD. National Institutes of Health, the Canada Excellence Research Chairs program, Aligning Science Across Parkinson's, the Michael J. Fox Foundation for Parkinson's Research, and the UK Medical Research Council.

Sections du résumé

Background UNASSIGNED
Parkinson's disease (PD) is a progressive neurodegenerative disorder. Mendelian forms have revealed multiple genes, with a notable emphasis on membrane trafficking; RAB GTPases play an important role in PD as a subset are both regulators and substrates of LRRK2 protein kinase. To explore the role of RAB GTPases in PD, we undertook a comprehensive examination of their genetic variability in familial PD.
Methods UNASSIGNED
Affected probands from 130 multi-incident PD families underwent whole-exome sequencing and genotyping, Potential pathogenic variants in 61 RAB GTPases were genotyped in relatives to assess disease segregation. These variants were also genotyped in a larger case-control series, totaling 3,078 individuals (2,734 with PD). The single most significant finding was subsequently validated within genetic data (6,043 with PD). Clinical and pathologic findings were summarized for gene-identified patients, and haplotypes were constructed. In parallel, wild-type and mutant RAB GTPase structural variation, protein interactions, and resultant enzyme activities were assessed.
Findings UNASSIGNED
We found
Interpretation UNASSIGNED
Our study provides unequivocal evidence to implicate RAB32 Ser71Arg in PD. Functional analysis demonstrates LRRK2 kinase activation. We provide a mechanistic explanation to expand and unify the etiopathogenesis of monogenic PD.
Funding UNASSIGNED
National Institutes of Health, the Canada Excellence Research Chairs program, Aligning Science Across Parkinson's, the Michael J. Fox Foundation for Parkinson's Research, and the UK Medical Research Council.

Identifiants

pubmed: 38293014
doi: 10.1101/2024.01.17.24300927
pmc: PMC10827257
pii:
doi:

Types de publication

Preprint

Langues

eng

Subventions

Organisme : NINDS NIH HHS
ID : R21 NS064885
Pays : United States
Organisme : NINDS NIH HHS
ID : P50 NS040256
Pays : United States
Organisme : Medical Research Council
ID : G0700943
Pays : United Kingdom
Organisme : Parkinson's UK
ID : K-1501
Pays : United Kingdom
Organisme : Wellcome Trust
Pays : United Kingdom
Organisme : Medical Research Council
ID : MR/T018569/1
Pays : United Kingdom
Organisme : Medical Research Council
ID : G1100643
Pays : United Kingdom

Déclaration de conflit d'intérêts

AR receives unrestricted research support from the Dr. Ali Rajput Endowment for Parkinson’s Disease and Movement Disorders; in the past two years AR has received honoraria from CQDM/Brain Canada and Ipsen Biopharmaceuticals Canada. MSG reports grants from NIH/NINDS and the Michael J. Fox Foundation for Parkinson’s Research. AJS has received fees from Neurocrine (Chair, DSMB), AskBio (Member, DSMB) and Capsida (advisor), receives a stipend from the International Parkinsons and Movement Disorders Society (Editor-in-Chief, Movement Disorders) and grant funding from Michael J. Fox Foundation, Weston Brain Institute and Brain Canada. ZGO received consultancy fees from Bial Biotec, Bial, Capsida, Handl Therapeutics, Idorsia, Neuron23, Ono Therapeutics, Prevail Therapeutics, UCB and Vanqua. He reports grants from the Michael J. Fox Foundation for Parkinson’s Research, The Weston Family Foundation, The Silverstein Foundation, NIH and the Canadian Consortium on Neurodegeneration in Aging (CCNA). MJF reports US patents associated with LRRK2 mutations and mouse models (8409809, 8455243), and methods of treating neurodegenerative disease (20110092565). SAC has received honoraria from Merz, and grant funding from the Pacific Parkinson’s Research Institute, the Weston Family Foundation, Parkinson Canada, Canadian Institutes of Health Research, the VGH and UBC Hospital Foundation, Rick’s Heart Foundation and the Jack and Darlene Poole Foundation.

Références

Nat Rev Mol Cell Biol. 2007 Oct;8(10):786-97
pubmed: 17878918
Nature. 2014 Jun 5;510(7503):162-6
pubmed: 24784582
EMBO J. 2015 Nov 12;34(22):2840-61
pubmed: 26471730
Neuron. 2013 Feb 6;77(3):425-39
pubmed: 23395371
Annu Rev Immunol. 2021 Apr 26;39:131-166
pubmed: 33481643
J Cell Sci. 2020 Jun 11;133(11):
pubmed: 32295849
Am J Hum Genet. 2005 Apr;76(4):672-80
pubmed: 15726496
Nat Rev Neurol. 2013 Jan;9(1):13-24
pubmed: 23183883
Science. 2004 May 21;304(5674):1158-60
pubmed: 15087508
Science. 2020 Jul 24;369(6502):450-455
pubmed: 32703879
NPJ Parkinsons Dis. 2023 Dec 18;9(1):167
pubmed: 38110354
Science. 2004 Aug 27;305(5688):1292-5
pubmed: 15333840
Science. 1997 Jun 27;276(5321):2045-7
pubmed: 9197268
J Biol Chem. 2023 Oct;299(10):105192
pubmed: 37625589
J Biochem. 2017 Aug 1;162(2):65-71
pubmed: 28430987
Small GTPases. 2021 Mar;12(2):133-146
pubmed: 31552791
N Engl J Med. 2021 Nov 11;385(20):1868-1880
pubmed: 34758253
Biochem J. 2021 Oct 15;478(19):3555-3573
pubmed: 34515301
Am J Hum Genet. 2014 Dec 4;95(6):729-35
pubmed: 25434005
FEBS Open Bio. 2018 Sep 21;8(10):1658-1668
pubmed: 30338217
Trends Microbiol. 2018 Sep;26(9):769-780
pubmed: 29703496
Elife. 2016 Jan 29;5:
pubmed: 26824392
Front Neurol. 2018 Dec 11;9:1021
pubmed: 30619023
Nature. 2021 Aug;596(7873):583-589
pubmed: 34265844
Science. 2023 Dec 22;382(6677):1404-1411
pubmed: 38127736
Elife. 2022 Sep 23;11:
pubmed: 36149401
J Neurol Neurosurg Psychiatry. 1992 Mar;55(3):181-4
pubmed: 1564476
Front Immunol. 2018 Jan 30;9:127
pubmed: 29441073
Small GTPases. 2018 May 4;9(3):216-223
pubmed: 27645564
Nature. 1998 Apr 9;392(6676):605-8
pubmed: 9560156
JAMA Neurol. 2015 Jan;72(1):100-5
pubmed: 25401511
Nat Genet. 2014 Sep;46(9):989-93
pubmed: 25064009
Immunity. 2016 Feb 16;44(2):422-37
pubmed: 26885862
Nature. 2019 Jul;571(7766):565-569
pubmed: 31316206
Sci Transl Med. 2012 Dec 12;4(164):164ra161
pubmed: 23241745

Auteurs

Emil K Gustavsson (EK)

Department of Genetics and Genomic Medicine, Great Ormond Street Institute of Child Health, University College London, London WC1N 1EH, UK.
Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.
Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA.

Jordan Follett (J)

McKnight Brain Institute, Department of Neurology, University of Florida, Gainesville, Florida, USA.
Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.

Joanne Trinh (J)

Institute of Neurogenetics, University of Lübeck, Ratzeburger Allee 160, Lübeck 23538, Germany.
Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.

Sandeep K Barodia (SK)

Department of Neurology, Center for Neurodegeneration and Experimental Therapeutics, University of Alabama at Birmingham, Birmingham, AL, USA.

Raquel Real (R)

Department of Clinical and Movement Neurosciences, UCL Queen Square Institute of Neurology, University College London, London WC1N 3BG, UK.
UCL Movement Disorders Centre, University College London, London WC1N 3BG, UK.
Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA.

Zhiyong Liu (Z)

Department of Neurology, Center for Neurodegeneration and Experimental Therapeutics, University of Alabama at Birmingham, Birmingham, AL, USA.

Melissa Grant-Peters (M)

Department of Genetics and Genomic Medicine, Great Ormond Street Institute of Child Health, University College London, London WC1N 1EH, UK.
MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.

Jesse D Fox (JD)

Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.

Silke Appel-Cresswell (S)

Pacific Parkinson's Research Centre, Djavad Mowafaghian Centre for Brain Health, Division of Neurology, University of British Columbia, Vancouver, BC, Canada.

A Jon Stoessl (AJ)

Pacific Parkinson's Research Centre, Djavad Mowafaghian Centre for Brain Health, Division of Neurology, University of British Columbia, Vancouver, BC, Canada.

Alex Rajput (A)

Movement Disorders Program, Division of Neurology, University of Saskatchewan and Saskatchewan Health Authority, Saskatoon, SK, Canada.

Ali H Rajput (AH)

Movement Disorders Program, Division of Neurology, University of Saskatchewan and Saskatchewan Health Authority, Saskatoon, SK, Canada.

Roland Auer (R)

Department of Pathology, University of Saskatchewan and Saskatchewan Health Authority, Saskatoon, SK, Canada.

Russel Tilney (R)

Department of Clinical and Movement Neurosciences, UCL Queen Square Institute of Neurology, University College London, London WC1N 3BG, UK.
UCL Movement Disorders Centre, University College London, London WC1N 3BG, UK.

Marc Sturm (M)

Institute for Medical Genetics and Applied Genomics, University of Tübingen, Germany.

Tobias B Haack (TB)

Institute for Medical Genetics and Applied Genomics, University of Tübingen, Germany.

Suzanne Lesage (S)

Sorbonne Université, Institut du Cerveau-Paris Brain Institute-ICM, Inserm, CNRS, Paris, France.

Christelle Tesson (C)

Sorbonne Université, Institut du Cerveau-Paris Brain Institute-ICM, Inserm, CNRS, Paris, France.

Alexis Brice (A)

Sorbonne Université, Institut du Cerveau-Paris Brain Institute-ICM, Inserm, CNRS, Paris, France.
Assistance Publique Hôpitaux de Paris, Hôpital Pitié-Salpêtrière, Département de Neurologie, Centre d'Investigation Clinique Neurosciences, DMU Neuroscience, Paris, France.

Carles Vilariño-Güell (C)

Department of Medical Genetics, University of British Columbia, Vancouver V6T 1Z3, Canada.

Mina Ryten (M)

Department of Genetics and Genomic Medicine, Great Ormond Street Institute of Child Health, University College London, London WC1N 1EH, UK.
NIHR Great Ormond Street Hospital Biomedical Research Centre, University College London, London WC1N 1EH, UK.
Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA.

Matthew S Goldberg (MS)

Department of Neurology, Center for Neurodegeneration and Experimental Therapeutics, University of Alabama at Birmingham, Birmingham, AL, USA.

Andrew B West (AB)

Duke Center for Neurodegeneration and Neurotherapeutics, Department of Pharmacology and Cancer Biology, Duke University, 3 Genome Court, Durham 27710, North Carolina, USA.

Michele T Hu (MT)

Division of Neurology, Nuffield Department of Clinical Neurosciences, University of Oxford, UK.

Huw R Morris (HR)

Department of Clinical and Movement Neurosciences, UCL Queen Square Institute of Neurology, University College London, London WC1N 3BG, UK.
UCL Movement Disorders Centre, University College London, London WC1N 3BG, UK.
Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA.

Manu Sharma (M)

Centre for Genetic Epidemiology, Institute for Clinical Epidemiology and Applied Biometry, University of Tübingen, Germany.

Ziv Gan-Or (Z)

The Neuro (Montreal Neurological Institute-Hospital), Montreal, Quebec, Canada.
Department of Neurology and Neurosurgery, McGill University, Montreal, Quebec, Canada.
Department of Human Genetics, McGill University, Montreal, Quebec, Canada.

Bedia Samanci (B)

Behavioural Neurology and Movement Disorders Unit, Department of Neurology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.

Pawel Lis (P)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA.

Teresa Tocino (T)

Queen Mary College, University of London, UK.

Rim Amouri (R)

Service de Neurologie, Institut National de Neurologie, La Rabta, Tunis 1007, Tunisia.

Samia Ben Sassi (SB)

Service de Neurologie, Institut National de Neurologie, La Rabta, Tunis 1007, Tunisia.

Faycel Hentati (F)

Service de Neurologie, Institut National de Neurologie, La Rabta, Tunis 1007, Tunisia.

Francesca Tonelli (F)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA.

Dario R Alessi (DR)

MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA.

Matthew J Farrer (MJ)

McKnight Brain Institute, Department of Neurology, University of Florida, Gainesville, Florida, USA.
Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.

Classifications MeSH