Implicit neural representations for unsupervised super-resolution and denoising of 4D flow MRI.
Journal
Computer methods and programs in biomedicine
ISSN: 1872-7565
Titre abrégé: Comput Methods Programs Biomed
Pays: Ireland
ID NLM: 8506513
Informations de publication
Date de publication:
07 Feb 2024
07 Feb 2024
Historique:
received:
22
09
2023
revised:
02
02
2024
accepted:
02
02
2024
medline:
10
2
2024
pubmed:
10
2
2024
entrez:
9
2
2024
Statut:
aheadofprint
Résumé
4D flow magnetic resonance imaging provides time-resolved blood flow velocity measurements, but suffers from limitations in spatio-temporal resolution and noise. In this study, we investigated the use of sinusoidal representation networks (SIRENs) to improve denoising and super-resolution of velocity fields measured by 4D flow MRI in the thoracic aorta. Efficient training of SIRENs in 4D was achieved by sampling voxel coordinates and enforcing the no-slip condition at the vessel wall. A set of synthetic measurements were generated from computational fluid dynamics simulations, reproducing different noise levels. The influence of SIREN architecture was systematically investigated, and the performance of our method was compared to existing approaches for 4D flow denoising and super-resolution. Compared to existing techniques, a SIREN with 300 neurons per layer and 20 layers achieved lower errors (up to 50% lower vector normalized root mean square error, 42% lower magnitude normalized root mean square error, and 15% lower direction error) in velocity and wall shear stress fields. Applied to real 4D flow velocity measurements in a patient-specific aortic aneurysm, our method produced denoised and super-resolved velocity fields while maintaining accurate macroscopic flow measurements. This study demonstrates the feasibility of using SIRENs for complex blood flow velocity representation from clinical 4D flow, with quick execution and straightforward implementation.
Sections du résumé
BACKGROUND AND OBJECTIVE
OBJECTIVE
4D flow magnetic resonance imaging provides time-resolved blood flow velocity measurements, but suffers from limitations in spatio-temporal resolution and noise. In this study, we investigated the use of sinusoidal representation networks (SIRENs) to improve denoising and super-resolution of velocity fields measured by 4D flow MRI in the thoracic aorta.
METHODS
METHODS
Efficient training of SIRENs in 4D was achieved by sampling voxel coordinates and enforcing the no-slip condition at the vessel wall. A set of synthetic measurements were generated from computational fluid dynamics simulations, reproducing different noise levels. The influence of SIREN architecture was systematically investigated, and the performance of our method was compared to existing approaches for 4D flow denoising and super-resolution.
RESULTS
RESULTS
Compared to existing techniques, a SIREN with 300 neurons per layer and 20 layers achieved lower errors (up to 50% lower vector normalized root mean square error, 42% lower magnitude normalized root mean square error, and 15% lower direction error) in velocity and wall shear stress fields. Applied to real 4D flow velocity measurements in a patient-specific aortic aneurysm, our method produced denoised and super-resolved velocity fields while maintaining accurate macroscopic flow measurements.
CONCLUSIONS
CONCLUSIONS
This study demonstrates the feasibility of using SIRENs for complex blood flow velocity representation from clinical 4D flow, with quick execution and straightforward implementation.
Identifiants
pubmed: 38335865
pii: S0169-2607(24)00053-1
doi: 10.1016/j.cmpb.2024.108057
pii:
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
108057Informations de copyright
Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.
Déclaration de conflit d'intérêts
Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.