Chromosomal level genome assemblies of two Malus crabapple cultivars Flame and Royalty.

Anthocyanins Chromosomes Flavonoids Malus / genetics Genome, Plant

Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
13 Feb 2024
Historique:
received: 07 11 2023
accepted: 05 02 2024
medline: 15 2 2024
pubmed: 14 2 2024
entrez: 13 2 2024
Statut: epublish

Résumé

Malus hybrid 'Flame' and Malus hybrid 'Royalty' are representative ornamental crabapples, rich in flavonoids and serving as the preferred materials for studying the coloration mechanism. We generated two sets of high-quality chromosome-level and haplotype-resolved genome of 'Flame' with sizes of 688.2 Mb and 675.7 Mb, and those of 'Royalty' with sizes of 674.1 Mb and 663.6 Mb, all anchored to 17 chromosomes and with a high BUSCO completeness score nearly 99.0%. A total of 47,833 and 47,307 protein-coding genes were annotated in the two haplotype genomes of 'Flame', and the numbers of 'Royalty' were 46,305 and 46,920 individually. The assembled high-quality genomes offer new resources for studying the origin and adaptive evolution of crabapples and the molecular basis of the accumulation of flavonoids and anthocyanins, facilitating molecular breeding of Malus plants.

Identifiants

DOI: 10.1038/s41597-024-03049-x PMID: 38351118 PMC: PMC10864326
pubmed: 38351118
doi: 10.1038/s41597-024-03049-x
pii: 10.1038/s41597-024-03049-x
pmc: PMC10864326
doi:

Substances chimiques

Anthocyanins 0
Flavonoids 0

Types de publication

Dataset Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

201

Subventions

Organisme : Beijing University of Agriculture (BUA)
ID : Start-up fund

Informations de copyright

© 2024. The Author(s).

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Auteurs

Hua Li (H)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.

Xuyang Zhai (X)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.

Haixu Peng (H)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.

You Qing (Y)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.
ORCID: 0000-0002-7273-3364

Yulin Deng (Y)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.

Shijie Zhou (S)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.

Tairui Bei (T)

Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China.

Ji Tian (J)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.

Jie Zhang (J)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.

Yujing Hu (Y)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.

Xiaoxiao Qin (X)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.

Yanfen Lu (Y)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.

Yuncong Yao (Y)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China.
ORCID: 0000-0001-5512-1668

Sen Wang (S)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China. wangsen@moilab.net.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China. wangsen@moilab.net.

Yi Zheng (Y)

Beijing Key Laboratory for Agriculture Application and New Technique, College of Plant Science and Technology, Beijing University of Agriculture, Beijing, 102206, China. yz@moilab.net.
Bioinformatics Center, Beijing University of Agriculture, Beijing, 102206, China. yz@moilab.net.

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Classifications MeSH

questionsmedicales.fr › Facteurs biologiques › Pigments biologiques › Anthocyanes › Chromosomal level genome assemblies of two...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Chromosomes › Chromosomal level genome assemblies of two...
questionsmedicales.fr › Composés hétérocycliques › Composés hétérocycliques à cycles fusionnés › Composés hétérobicycliques › Benzopyranes › 4H-1-Benzopyran-4-ones › Flavonoïdes › Chromosomal level genome assemblies of two...
questionsmedicales.fr › Eucaryotes › Viridiplantae › Streptophyta › Embryophyta › Tracheobionta › Magnoliopsida › Rosanae › Rosales › Rosaceae › Malus › Chromosomal level genome assemblies of two...
questionsmedicales.fr › Phénomènes génétiques › Structures génétiques › Génome › Génome végétal › Chromosomal level genome assemblies of two...