Enterobacterales carrying chromosomal AmpC β-lactamases in Europe (EuESCPM): epidemiology and antimicrobial resistance burden from a cohort of 27 hospitals, 2020-2022.

AmpC β-lactamase COVID-19 Enterobacterales antimicrobial resistance blood culture sepsis

Journal

International journal of antimicrobial agents
ISSN: 1872-7913
Titre abrégé: Int J Antimicrob Agents
Pays: Netherlands
ID NLM: 9111860

Informations de publication

Date de publication:
15 Feb 2024
Historique:
received: 22 11 2023
revised: 03 02 2024
accepted: 11 02 2024
medline: 18 2 2024
pubmed: 18 2 2024
entrez: 17 2 2024
Statut: aheadofprint

Résumé

The ESCPM group (Enterobacter species including Klebsiella aerogenes - formerly Enterobacter aerogenes, Serratia species, Citrobacter freundii complex, Providencia species and Morganella morganii) has not yet been incorporated into systematic surveillance programs. We conducted a multicentre retrospective observational study analysing all ESCPM strains isolated from blood cultures in 27 European hospitals over a three-year period (2020-2022). Diagnostic approach, epidemiology, and antimicrobial susceptibility were investigated. Our study comprised 6,774 ESCPM isolates. MALDI-TOF coupled to mass spectrometry was the predominant technique for bacterial identification. Susceptibility to new β-lactam/β-lactamase inhibitor combinations and confirmation of AmpC overproduction were routinely tested in 33.3% and 29.6% of the centres, respectively. The most prevalent species were E. cloacae complex (44.8%) and S. marcescens (22.7%). Overall, third-generation cephalosporins (3GC), combined third- and fourth-generation cephalosporins (3GC + 4GC) and carbapenems resistance phenotypes were observed in 15.7%, 4.6%, and 9.5% of the isolates, respectively. AmpC overproduction was the most prevalent resistance mechanism detected (15.8%). Among carbapenemase-producers, carbapenemase type was provided in 44.4% of the isolates, VIM- (22.9%) and OXA-48-enzyme (16%) being the most frequently detected. E. cloacae complex, K. aerogenes and Providencia species exhibited the most notable cumulative antimicrobial resistance profiles, with the former displaying 3GC, combined 3GC + 4GC and carbapenems resistance phenotypes in 15.2%, 7.4%, and 12.8% of the isolates, respectively. K. aerogenes showed the highest rate of both 3GC resistant phenotype (29.8%) and AmpC overproduction (32.1%), while Providencia species those of both carbapenems resistance phenotype (42.7%) and carbapenemase production (29.4%). ESCPM isolates exhibiting both 3GC and combined 3GC + 4GC resistance phenotypes displayed high susceptibility to ceftazidime/avibactam (98.2% and 95.7%, respectively) and colistin (90.3% and 90.7%, respectively). Colistin emerged as the most active drug against ESCPM species (except those intrinsically resistant) displaying both carbapenems resistance phenotype (85.8%) and carbapenemase production (97.8%). This study presented a current analysis of ESCPM species epidemiology in Europe, providing insights to inform current antibiotic treatments and guide strategies for antimicrobial stewardship and diagnostics.

Identifiants

pubmed: 38367844
pii: S0924-8579(24)00033-5
doi: 10.1016/j.ijantimicag.2024.107115
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

107115

Informations de copyright

Copyright © 2024. Published by Elsevier Ltd.

Déclaration de conflit d'intérêts

Competing Interests None.

Auteurs

Matteo Boattini (M)

Microbiology and Virology Unit, University Hospital Città della Salute e della Scienza di Torino, Turin, Italy; Department of Public Health and Paediatrics, University of Torino, Turin, Italy; Lisbon Academic Medical Centre, Lisbon, Portugal. Electronic address: matteo.boattini@unito.it.

Gabriele Bianco (G)

Microbiology and Virology Unit, University Hospital Città della Salute e della Scienza di Torino, Turin, Italy; Department of Public Health and Paediatrics, University of Torino, Turin, Italy.

Laura Iglesias Llorente (LI)

Service of Microbiology, Hospital Universitario de Gran Canaria Dr. Negrín, Las Palmas, Spain.

Laura Alonso Acero (LA)

Service of Microbiology, Hospital Universitario de Gran Canaria Dr. Negrín, Las Palmas, Spain.

Daniel Nunes (D)

Serviço de Patologia Clínica, Centro Hospitalar Universitário Lisboa Norte, and Faculdade de Medicina. Universidade de Lisboa, Lisbon, Portugal.

Miguel Seruca (M)

Department of Clinical Pathology, Centro Hospitalar Universitário de Lisboa Central, Lisbon, Portugal.

Vasco Santos Mendes (VS)

Department of Clinical Pathology, Centro Hospitalar Universitário de Lisboa Central, Lisbon, Portugal.

André Almeida (A)

Department of Internal Medicine 4, Centro Hospitalar Universitário de Lisboa Central, Centro Clínico Académico de Lisboa, Lisbon, Portugal; NOVA Medical School, Universidade Nova de Lisboa, Centro Clínico Académico de Lisboa, Lisbon, Portugal.

Paulo Bastos (P)

Independent researcher.

Ángel Rodríguez-Villodres (Á)

Clinical Unit of Infectious Diseases, Microbiology and Parasitology, University Hospital Virgen del Rocío, Seville, Spain. Institute of Biomedicine of Seville (IBiS), University Hospital Virgen del Rocío/CSIC/University of Seville, Seville, Spain. Centro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain.

Adelina Gimeno Gascón (AG)

Clinical Unit of Infectious Diseases, Microbiology and Parasitology, University Hospital Virgen del Rocío, Seville, Spain. Institute of Biomedicine of Seville (IBiS), University Hospital Virgen del Rocío/CSIC/University of Seville, Seville, Spain. Centro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain.

Ana Verónica Halperin (AV)

Servicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigaciones Sanitarias (IRYCIS), Madrid, Spain.

Rafael Cantón (R)

Servicio de Microbiología. Hospital Universitario Ramón y Cajal and Instituto Ramón y Cajal de Investigaciones Sanitarias (IRYCIS), Madrid, Spain; CIBER de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain.

Maria Nieves Larrosa Escartín (MNL)

Department of Clinical Microbiology, Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain. Vall d'Hebron Institut de Recerca (VHIR), Barcelona, Spain. Department of Genetics and Microbiology, Universitat Autònoma de Barcelona, Bellaterra, Spain. CIBER de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain.

Juan José González-López (JJ)

Department of Clinical Microbiology, Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain. Vall d'Hebron Institut de Recerca (VHIR), Barcelona, Spain. Department of Genetics and Microbiology, Universitat Autònoma de Barcelona, Bellaterra, Spain. CIBER de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, Madrid, Spain.

Pauline Floch (P)

Université Toulouse, CHU Toulouse, Toulouse, France.

Clémence Massip (C)

Université Toulouse, CHU Toulouse, Toulouse, France.

Delphine Chainier (D)

Université Limoges, INSERM, CHU Limoges, UMR 1092, Limoges, France.

Olivier Barraud (O)

Université Limoges, INSERM, CHU Limoges, UMR 1092, Limoges, France.

Laurent Dortet (L)

Team Resist UMR1184 Université Paris Saclay, CEA, Inserm, Le Kremlin-Bicêtre, France; Service de Bactériologie-Hygiène, Centre Hospitalier Universitaire de Hôpital Bicêtre, Université Paris Saclay, AP-HP, Le Kremlin-Bicêtre, France; Centre national de référence associé de la résistance aux antibiotiques, Le Kremlin-Bicêtre, France.

Gaëlle Cuzon (G)

Service de Bactériologie-Hygiène, Centre Hospitalier Universitaire de Hôpital Bicêtre, Université Paris Saclay, AP-HP, Le Kremlin-Bicêtre, France.

Clément Zancanaro (C)

Service de Microbiologie Clinique, Groupe Hospitalier Paris Saint-Joseph, Paris, France.

Assaf Mizrahi (A)

Service de Microbiologie Clinique, Groupe Hospitalier Paris Saint-Joseph, Paris, France; Institut Micalis UMR 1319, Université Paris-Saclay, INRAe, AgroParisTech, Châtenay Malabry, France.

Rogier Schade (R)

Amsterdam UMC, Department of Medical Microbiology and Infection Prevention, Amsterdam, The Netherlands.

Asger Nellemann Rasmussen (AN)

Department of Clinical Microbiology, Copenhagen University Hospital - Rigshospitalet, Copenhagen, Denmark.

Kristian Schønning (K)

Department of Clinical Microbiology, Copenhagen University Hospital - Rigshospitalet, Copenhagen, Denmark; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

Axel Hamprecht (A)

Institute of Medical Microbiology and Virology, Carl von Ossietzky University Oldenburg, Oldenburg, Germany. Institute of Medical Microbiology and Virology, Klinikum Oldenburg, Oldenburg, Germany.

Lukas Schaffarczyk (L)

Institute of Medical Microbiology and Virology, Carl von Ossietzky University Oldenburg, Oldenburg, Germany. Institute of Medical Microbiology and Virology, Klinikum Oldenburg, Oldenburg, Germany.

Stefan Glöckner (S)

Institute of Medical Microbiology, Jena University Hospital, Friedrich Schiller University, Jena, Germany.

Jürgen Rödel (J)

Institute of Medical Microbiology, Jena University Hospital, Friedrich Schiller University, Jena, Germany.

Katalin Kristóf (K)

Institute of Laboratory Medicine, Semmelweis University, Budapest, Hungary.

Ágnes Balonyi (Á)

Institute of Laboratory Medicine, Semmelweis University, Budapest, Hungary.

Stefano Mancini (S)

Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland.

Chantal Quiblier (C)

Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland.

Teresa Fasciana (T)

Department of Health Promotion, Mother and Child Care, Internal Medicine and Medical Specialities, University of Palermo, 90127 Palermo, Italy.

Anna Giammanco (A)

Department of Health Promotion, Mother and Child Care, Internal Medicine and Medical Specialities, University of Palermo, 90127 Palermo, Italy.

Bianca Paglietti (B)

Università degli studi di Sassari, Italia; SC Microbiologia e Azienda Ospedaliero-Universitaria di Sassari (AOU Sassari), Sassari, Italy.

Salvatore Rubino (S)

Università degli studi di Sassari, Italia; SC Microbiologia e Azienda Ospedaliero-Universitaria di Sassari (AOU Sassari), Sassari, Italy.

Ana Budimir (A)

Clinical Department for clinical microbiology, prevention and control of infectious diseases, University of Zagreb School of Medicine, University Hospital Centre Zagreb, Kispatic street 12, 10000 Zagreb, Croatia.

Branka Bedenić (B)

Clinical Department for clinical microbiology, prevention and control of infectious diseases, University of Zagreb School of Medicine, University Hospital Centre Zagreb, Kispatic street 12, 10000 Zagreb, Croatia.

Zana Rubic (Z)

Department of Clinical Microbiology, University Hospital of Split, Croatia.

Jelena Marinović (J)

Department of Clinical Microbiology, University Hospital of Split, Croatia.

Konstantina Gartzonika (K)

Department of Microbiology, Faculty of Medicine, University of Ioannina, Greece.

Eirini Christaki (E)

1st Division of Internal Medicine and Infectious Diseases Unit, Faculty of Medicine, University of Ioannina, Greece.

Viktoria Eirini Mavromanolaki (VE)

Department of Paediatrics, Agios Nikolaos General Hospital, 721 00 Crete, Greece.

Sofia Maraki (S)

Department of Clinical Microbiology and Microbial Pathogenesis, University Hospital of Heraklion, 711 10 Crete, Greece.

Tuğba Yanık Yalçın (TY)

Department of Clinical Microbiology and Infectious Diseases, Baskent University Faculty of Medicine, Ankara, Turkey.

Özlem Kurt Azap (ÖK)

Department of Clinical Microbiology and Infectious Diseases, Baskent University Faculty of Medicine, Ankara, Turkey.

Monica Licker (M)

Microbiology Department, Multidisciplinary Research Center on Antimicrobial Resistance, 'Victor Babes' University of Medicine and Pharmacy, Timisoara, Romania. Microbiology Laboratory, 'Pius Branzeu' Emergency Clinical County Hospital, Timisoara, Romania.

Corina Musuroi (C)

Microbiology Department, Multidisciplinary Research Center on Antimicrobial Resistance, 'Victor Babes' University of Medicine and Pharmacy, Timisoara, Romania. Microbiology Laboratory, 'Pius Branzeu' Emergency Clinical County Hospital, Timisoara, Romania.

Daniela Talapan (D)

National Institute for Infectious Diseases "Matei Bals", Bucharest, Romania.

Vrancianu Corneliu Ovidiu (VC)

The Research Institute of the University of Bucharest, ICUB, Bucharest, Romania; Microbiology-Immunology Department, Faculty of Biology, University of Bucharest, 050095 Bucharest, Romania; National Institute of Research and Development for Biological Sciences, 296 Splaiul Independentei, District 6, 060031 Bucharest, Romania.

Sara Comini (S)

Operative Unit of Clinical Pathology, Carlo Urbani Hospital, Jesi, Ancona, Italy.

Patrycja Zalas-Więcek (P)

Department of Microbiology, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University (NCU) in Toruń, 9 Skłodowska-Curie St 85-094 Bydgoszcz, Poland. Clinical Microbiology Division, Antoni Jurasz University Hospital No. 1 in Bydgoszcz, 9 Skłodowska-Curie St 85-094 Bydgoszcz, Poland.

Anna Michalska (A)

Department of Microbiology, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University (NCU) in Toruń, 9 Skłodowska-Curie St 85-094 Bydgoszcz, Poland. Clinical Microbiology Division, Antoni Jurasz University Hospital No. 1 in Bydgoszcz, 9 Skłodowska-Curie St 85-094 Bydgoszcz, Poland.

Rossana Cavallo (R)

Microbiology and Virology Unit, University Hospital Città della Salute e della Scienza di Torino, Turin, Italy; Department of Public Health and Paediatrics, University of Torino, Turin, Italy.

José Melo Cristino (JM)

Serviço de Patologia Clínica, Centro Hospitalar Universitário Lisboa Norte, and Faculdade de Medicina. Universidade de Lisboa, Lisbon, Portugal.

Cristina Costa (C)

Microbiology and Virology Unit, University Hospital Città della Salute e della Scienza di Torino, Turin, Italy; Department of Public Health and Paediatrics, University of Torino, Turin, Italy.

Classifications MeSH