DNA barcodes reliably differentiate between nivicolous species of Diderma (Myxomycetes, Amoebozoa) and reveal regional differences within Eurasia.

18S rDNA COI Didymiaceae Diversity EF1A Myxogastria

Journal

Protist
ISSN: 1618-0941
Titre abrégé: Protist
Pays: Germany
ID NLM: 9806488

Informations de publication

Date de publication:
10 Feb 2024
Historique:
received: 31 07 2023
revised: 03 01 2024
accepted: 09 02 2024
medline: 18 2 2024
pubmed: 18 2 2024
entrez: 18 2 2024
Statut: aheadofprint

Résumé

The nivicolous species of the genus Diderma are challenging to identify, and there are several competing views on their delimitation. We analyzed 102 accessions of nivicolous Diderma spp. that were sequenced for two or three unlinked genes to determine which of the current taxonomic treatments is better supported by molecular species delimitation methods. The results of a haplotype web analysis, Bayesian species delimitation under a multispecies coalescent model, and phylogenetic analyses on concatenated alignments support a splitting approach that distinguishes six taxa: Diderma alpinum, D. europaeum, D. kamchaticum, D. meyerae, D. microcarpum and D. niveum. The first two approaches also support the separation of Diderma alpinum into two species with allopatric distribution. An extended dataset of 800 specimens (mainly from Europe) that were barcoded with 18S rDNA revealed only barcode variants similar to those in the species characterized by the first data set, and showed an uneven distribution of these species in the Northern Hemisphere: Diderma microcarpum and D. alpinum were the only species found in all seven intensively sampled mountain regions. Partial 18S rDNA sequences serving as DNA barcodes provided clear signatures that allowed for unambiguous identification of the nivicolous Diderma spp., including two putative species in D. alpinum.

Identifiants

pubmed: 38368650
pii: S1434-4610(24)00015-4
doi: 10.1016/j.protis.2024.126023
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

126023

Informations de copyright

Copyright © 2024 The Authors. Published by Elsevier GmbH.. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Oleg N Shchepin (ON)

Institute of Botany and Landscape Ecology, University Greifswald, Soldmannstr. 15, 17487 Greifswald, Germany; Komarov Botanical Institute of the Russian Academy of Sciences, Laboratory of Systematics and Geography of Fungi, Prof. Popov Street 2, 197376 St. Petersburg, Russia. Electronic address: oleg.shchepin@uni-greifswald.de.

Ángela López Villalba (Á)

Institute of Botany and Landscape Ecology, University Greifswald, Soldmannstr. 15, 17487 Greifswald, Germany.

Maho Inoue (M)

Institute of Botany and Landscape Ecology, University Greifswald, Soldmannstr. 15, 17487 Greifswald, Germany.

Ilya S Prikhodko (IS)

Komarov Botanical Institute of the Russian Academy of Sciences, Laboratory of Systematics and Geography of Fungi, Prof. Popov Street 2, 197376 St. Petersburg, Russia.

Daria A Erastova (DA)

Komarov Botanical Institute of the Russian Academy of Sciences, Laboratory of Systematics and Geography of Fungi, Prof. Popov Street 2, 197376 St. Petersburg, Russia.

Mikhail V Okun (MV)

Komarov Botanical Institute of the Russian Academy of Sciences, Laboratory of Systematics and Geography of Fungi, Prof. Popov Street 2, 197376 St. Petersburg, Russia.

Jan Woyzichovski (J)

Institute of Botany and Landscape Ecology, University Greifswald, Soldmannstr. 15, 17487 Greifswald, Germany.

Yuka Yajima (Y)

Department of Science and Informatics, Muroran Institute of Technology, Mizumoto-cho 27-1, 0508585 Muroran, Japan.

Vladimir I Gmoshinskiy (VI)

Department of Mycology and Algology, Faculty of Biology, Moscow State University, Leninskie Gory 1/12, Moscow 119992, Russia.

Gabriel Moreno (G)

Departamento Ciencias de la Vida (Botanica), Universidad de Alcala, Alcala de Henares, Madrid 28805, Spain.

Yuri K Novozhilov (YK)

Komarov Botanical Institute of the Russian Academy of Sciences, Laboratory of Systematics and Geography of Fungi, Prof. Popov Street 2, 197376 St. Petersburg, Russia.

Martin Schnittler (M)

Institute of Botany and Landscape Ecology, University Greifswald, Soldmannstr. 15, 17487 Greifswald, Germany.

Classifications MeSH