A self-supervised learning approach for registration agnostic imaging models with 3D brain CTA.

Classification Description Medical imaging Machine learning Neuroanatomy

Journal

iScience
ISSN: 2589-0042
Titre abrégé: iScience
Pays: United States
ID NLM: 101724038

Informations de publication

Date de publication:
15 Mar 2024
Historique:
received: 09 11 2023
revised: 20 12 2023
accepted: 19 01 2024
medline: 20 2 2024
pubmed: 20 2 2024
entrez: 20 2 2024
Statut: epublish

Résumé

Deep learning-based neuroimaging pipelines for acute stroke typically rely on image registration, which not only increases computation but also introduces a point of failure. In this paper, we propose a general-purpose contrastive self-supervised learning method that converts a convolutional deep neural network designed for registered images to work on a different input domain, i.e., with unregistered images. This is accomplished by using a self-supervised strategy that does not rely on labels, where the original model acts as a teacher and a new network as a student. Large vessel occlusion (LVO) detection experiments using computed tomographic angiography (CTA) data from 402 CTA patients show the student model achieving competitive LVO detection performance (area under the receiver operating characteristic curve [AUC] = 0.88 vs. AUC = 0.81) compared to the teacher model, even with unregistered images. The student model trained directly on unregistered images using standard supervised learning achieves an AUC = 0.63, highlighting the proposed method's efficacy in adapting models to different pipelines and domains.

Identifiants

pubmed: 38375230
doi: 10.1016/j.isci.2024.109004
pii: S2589-0042(24)00225-6
pmc: PMC10875112
doi:

Types de publication

Journal Article

Langues

eng

Pagination

109004

Informations de copyright

© 2024 The Author(s).

Déclaration de conflit d'intérêts

The authors declare no competing interests.

Auteurs

Yingjun Dong (Y)

McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin Street, Houston, TX, USA.

Samiksha Pachade (S)

McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin Street, Houston, TX, USA.

Xiaomin Liang (X)

McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin Street, Houston, TX, USA.

Sunil A Sheth (SA)

Department of Neurology, McGovern Medical School, University of Texas Health Science Center at Houston, 6431 Fannin Street, Houston, TX, USA.

Luca Giancardo (L)

McWilliams School of Biomedical Informatics, University of Texas Health Science Center at Houston, 7000 Fannin Street, Houston, TX, USA.
Institute for Stroke and Cerebrovascular Diseases, University of Texas Health Science Center at Houston, 7000 Fannin Street, Houston, TX, USA.

Classifications MeSH