High-quality genome assemblies of four members of the Podospora anserina species complex.

Podospora bellae-mahoneyi Podospora pseudoanserina Podospora pseudocomata Podospora pseudopauciseta chromosomal rearrangements Sordariales phylogenomics

Journal

Genome biology and evolution
ISSN: 1759-6653
Titre abrégé: Genome Biol Evol
Pays: England
ID NLM: 101509707

Informations de publication

Date de publication:
22 Feb 2024
Historique:
received: 31 10 2023
revised: 29 12 2023
accepted: 17 02 2024
medline: 22 2 2024
pubmed: 22 2 2024
entrez: 22 2 2024
Statut: aheadofprint

Résumé

The filamentous fungus Podospora anserina is a model organism used extensively in the study of molecular biology, senescence, prion biology, meiotic drive, mating-type chromosome evolution, and plant biomass degradation. It has recently been established that P. anserina is a member of a complex of seven, closely related species. In addition to P. anserina, high-quality genomic resources are available for two of these taxa. Here we provide chromosome-level annotated assemblies of the four remaining species of the complex, as well as a comprehensive dataset of annotated assemblies from a total of 28 Podospora genomes. We find that all seven species have genomes of around 35 Mbp arranged in seven chromosomes that are mostly collinear and less than 2% divergent from each other at genic regions. We further attempt to resolve their phylogenetic relationships, finding significant levels of phylogenetic conflict as expected from a rapid and recent diversification.

Identifiants

pubmed: 38386982
pii: 7612620
doi: 10.1093/gbe/evae034
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© The Author(s) 2024. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.

Auteurs

S Lorena Ament-Velásquez (SL)

Division of Population Genetics, Department of Zoology, Stockholm University, 106 91 Stockholm, Sweden.

Aaron A Vogan (AA)

Systematic Biology, Department of Organismal Biology, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden.

Ola Wallerman (O)

Department of Medical Biochemistry and Microbiology, Comparative genetics and functional genomics; Uppsala University, Husargatan 3, 752 37 Uppsala, Sweden.

Fanny Hartmann (F)

Ecologie Systematique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, 91198 Gif-sur-Yvette, France.

Valérie Gautier (V)

Université de Paris Cité, Laboratoire Interdisciplinaire des Energies de Demain (LIED) F-75013 Paris, France.

Philippe Silar (P)

Université de Paris Cité, Laboratoire Interdisciplinaire des Energies de Demain (LIED) F-75013 Paris, France.

Tatiana Giraud (T)

Ecologie Systematique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, 91198 Gif-sur-Yvette, France.

Hanna Johannesson (H)

Systematic Biology, Department of Organismal Biology, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden.
The Royal Swedish Academy of Sciences, 114 18 Stockholm, Sweden.
Department of Ecology, environmental and Plant Sciences, Stockholm University, 106 91 Stockholm, Sweden.

Classifications MeSH