Generalising XTRACT tractography protocols across common macaque brain templates.
Comparative anatomy
Connectivity
Diffusion MRI
F99
INIA
NHP
NMT
Yerkes19
Journal
Brain structure & function
ISSN: 1863-2661
Titre abrégé: Brain Struct Funct
Pays: Germany
ID NLM: 101282001
Informations de publication
Date de publication:
23 Feb 2024
23 Feb 2024
Historique:
received:
03
11
2023
accepted:
09
01
2024
medline:
23
2
2024
pubmed:
23
2
2024
entrez:
22
2
2024
Statut:
aheadofprint
Résumé
Non-human primates are extensively used in neuroscience research as models of the human brain, with the rhesus macaque being a prominent example. We have previously introduced a set of tractography protocols (XTRACT) for reconstructing 42 corresponding white matter (WM) bundles in the human and the macaque brain and have shown cross-species comparisons using such bundles as WM landmarks. Our original XTRACT protocols were developed using the F99 macaque brain template. However, additional macaque template brains are becoming increasingly common. Here, we generalise the XTRACT tractography protocol definitions across five macaque brain templates, including the F99, D99, INIA, Yerkes and NMT. We demonstrate equivalence of such protocols in two ways: (a) Firstly by comparing the bodies of the tracts derived using protocols defined across the different templates considered, (b) Secondly by comparing the projection patterns of the reconstructed tracts across the different templates in two cross-species (human-macaque) comparison tasks. The results confirm similarity of all predictions regardless of the macaque brain template used, providing direct evidence for the generalisability of these tractography protocols across the five considered templates.
Identifiants
pubmed: 38388696
doi: 10.1007/s00429-024-02760-0
pii: 10.1007/s00429-024-02760-0
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : European Research Council
ID : 101000969
Pays : International
Organisme : European Research Council
ID : 101000969
Pays : International
Organisme : European Research Council
ID : 101000969
Pays : International
Organisme : Wellcome Trust
ID : 203139/Z/16/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 203139/Z/16/Z
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 203139/Z/16/Z
Pays : United Kingdom
Informations de copyright
© 2024. The Author(s).
Références
Andersson JLR, Jenkinson M, Smith SM (2007) Non-linear optimisation (FMRIB Technical Report TR07JA1)
Avants BB, Yushkevich P, Pluta J, Minkoff D, Korczykowski M, Detre J, Gee JC (2010) The optimal template effect in hippocampus studies of diseased populations. Neuroimage 49:2457–2466. https://doi.org/10.1016/j.neuroimage.2009.09.062
doi: 10.1016/j.neuroimage.2009.09.062
pubmed: 19818860
Avants BB, Tustison NJ, Song G, Cook PA, Klein A, Gee JC (2011) A reproducible evaluation of ANTs similarity metric performance in brain image registration. Neuroimage 54:2033–2044. https://doi.org/10.1016/j.neuroimage.2010.09.025
doi: 10.1016/j.neuroimage.2010.09.025
pubmed: 20851191
Bryant KL, Li L, Eichert N, Mars RB (2020) A comprehensive atlas of white matter tracts in the chimpanzee. PLoS Biol 18:e3000971. https://doi.org/10.1371/journal.pbio.3000971
doi: 10.1371/journal.pbio.3000971
pubmed: 33383575
pmcid: 7806129
Bryant KL, Manger PR, Bertelsen MF, Khrapitchev AA, Sallet J, Benn RA, Mars RB (2023) A map of white matter tracts in a lesser ape, the lar gibbon. Brain Struct Funct. https://doi.org/10.1007/s00429-023-02709-9
doi: 10.1007/s00429-023-02709-9
pubmed: 37904002
Catani M, Howard RJ, Pajevic S, Jones DK (2002) Virtual in vivo interactive dissection of white matter fasciculi in the human brain. Neuroimage 17:77–94. https://doi.org/10.1006/nimg.2002.1136
doi: 10.1006/nimg.2002.1136
pubmed: 12482069
Catani M, Dell’Acqua F, Vergani F, Malik F, Hodge H, Roy P, Valabregue R, Thiebaut de Schotten M (2012) Short frontal lobe connections of the human brain. Cortex 48:273–291. https://doi.org/10.1016/j.cortex.2011.12.001
doi: 10.1016/j.cortex.2011.12.001
pubmed: 22209688
de Schotten MT, Dell’Acqua F, Forkel SJ, Simmons A, Vergani F, Murphy DGM, Catani M (2011) A lateralized brain network for visuospatial attention. Nat Neurosci 14:1245–1246. https://doi.org/10.1038/nn.2905
doi: 10.1038/nn.2905
Donahue CJ, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, Behrens TE, Dyrby TB, Coalson T, Kennedy H, Knoblauch K, Van Essen DC, Glasser MF (2016) Using diffusion tractography to predict cortical connection strength and distance: a quantitative comparison with tracers in the monkey. J Neurosci 36:6758–6770. https://doi.org/10.1523/JNEUROSCI.0493-16.2016
doi: 10.1523/JNEUROSCI.0493-16.2016
pubmed: 27335406
pmcid: 4916250
Eichert N, Verhagen L, Folloni D, Jbabdi S, Khrapitchev AA, Sibson NR, Mantini D, Sallet J, Mars RB (2019) What is special about the human arcuate fasciculus? Lateralization, projections, and expansion. Cortex 118:107–115. https://doi.org/10.1016/j.cortex.2018.05.005
doi: 10.1016/j.cortex.2018.05.005
pubmed: 29937266
pmcid: 6699597
Eichert N, Robinson EC, Bryant KL, Jbabdi S, Jenkinson M, Li L, Krug K, Watkins KE, Mars RB (2020) Cross-species cortical alignment identifies different types of anatomical reorganization in the primate temporal lobe. Elife 9:e53232. https://doi.org/10.7554/eLife.53232
doi: 10.7554/eLife.53232
pubmed: 32202497
pmcid: 7180052
Folloni D, Sallet J, Khrapitchev AA, Sibson N, Verhagen L, Mars RB (2019) Dichotomous organization of amygdala/temporal-prefrontal bundles in both humans and monkeys. Elife 8:e47175. https://doi.org/10.7554/eLife.47175
doi: 10.7554/eLife.47175
pubmed: 31689177
pmcid: 6831033
Garin CM, Hori Y, Everling S, Whitlow CT, Calabro FJ, Luna B, Froesel M, Gacoin M, Ben Hamed S, Dhenain M, Constantinidis C (2022) An evolutionary gap in primate default mode network organization. Cell Rep 39:110669. https://doi.org/10.1016/j.celrep.2022.110669
doi: 10.1016/j.celrep.2022.110669
pubmed: 35417698
pmcid: 9088817
Glasser MF, Van Essen DC (2011) Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI. J Neurosci 31:11597–11616. https://doi.org/10.1523/JNEUROSCI.2180-11.2011
doi: 10.1523/JNEUROSCI.2180-11.2011
pubmed: 21832190
pmcid: 3167149
Glasser MF, Sotiropoulos SN, Wilson JA, Coalson TS, Fischl B, Andersson JL, Xu J, Jbabdi S, Webster M, Polimeni JR, Van Essen DC, Jenkinson M (2013) The minimal preprocessing pipelines for the Human Connectome Project. Neuroimage 80:105–124. https://doi.org/10.1016/j.neuroimage.2013.04.127
doi: 10.1016/j.neuroimage.2013.04.127
pubmed: 23668970
Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Andersson J, Beckmann CF, Jenkinson M, Smith SM, Van Essen DC (2016) A multi-modal parcellation of human cerebral cortex. Nature 536:171–178. https://doi.org/10.1038/nature18933
doi: 10.1038/nature18933
pubmed: 27437579
pmcid: 4990127
Hecht EE, Gutman DA, Preuss TM, Sanchez MM, Parr LA, Rilling JK (2013) Process versus product in social learning: comparative diffusion tensor imaging of neural systems for action execution-observation matching in macaques, chimpanzees, and humans. Cereb Cortex 23:1014–1024. https://doi.org/10.1093/cercor/bhs097
doi: 10.1093/cercor/bhs097
pubmed: 22539611
Hernández M, Guerrero GD, Cecilia JM, García JM, Inuggi A, Jbabdi S, Behrens TEJ, Sotiropoulos SN (2013) Accelerating fibre orientation estimation from diffusion weighted magnetic resonance imaging using GPUs. PLoS ONE 8:e61892. https://doi.org/10.1371/journal.pone.0061892
doi: 10.1371/journal.pone.0061892
pubmed: 23658616
pmcid: 3643787
Howells H, Thiebaut de Schotten M, Dell’Acqua F, Beyh A, Zappalà G, Leslie A, Simmons A, Murphy DG, Catani M (2018) Frontoparietal tracts linked to lateralized hand preference and manual specialization. Cereb Cortex 28:2482–2494. https://doi.org/10.1093/cercor/bhy040
doi: 10.1093/cercor/bhy040
pubmed: 29688293
Jbabdi S, Sotiropoulos SN, Savio AM, Graña M, Behrens TEJ (2012) Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems. Magn Reson Med 68:1846–1855. https://doi.org/10.1002/mrm.24204
doi: 10.1002/mrm.24204
pubmed: 22334356
pmcid: 3359399
Jbabdi S, Sotiropoulos SN, Haber SN, Van Essen DC, Behrens TE (2015) Measuring macroscopic brain connections in vivo. Nat Neurosci 18:1546–1555. https://doi.org/10.1038/nn.4134
doi: 10.1038/nn.4134
pubmed: 26505566
Jenkinson M, Beckmann CF, Behrens TEJ, Woolrich MW, Smith SM (2012) FSL. Neuroimage 62:782–790. https://doi.org/10.1016/j.neuroimage.2011.09.015
doi: 10.1016/j.neuroimage.2011.09.015
pubmed: 21979382
Klink C, Sirmpilatze N (2020) PRIME-RE/RheMAP: RheMAP v1.3 “Corona Edition”
Kullback S, Leibler RA (1951) On information and sufficiency. Ann Math Stat 22:79–86. https://doi.org/10.1214/aoms/1177729694
doi: 10.1214/aoms/1177729694
Lehman JF, Greenberg BD, McIntyre CC, Rasmussen SA, Haber SN (2011) Rules ventral prefrontal cortical axons use to reach their targets: implications for diffusion tensor imaging tractography and deep brain stimulation for psychiatric illness. J Neurosci 31:10392–10402. https://doi.org/10.1523/JNEUROSCI.0595-11.2011
doi: 10.1523/JNEUROSCI.0595-11.2011
pubmed: 21753016
pmcid: 3445013
Makris N, Papadimitriou GM, Kaiser JR, Sorg S, Kennedy DN, Pandya DN (2009) Delineation of the middle longitudinal fascicle in humans: a quantitative, in vivo, DT-MRI study. Cereb Cortex 19:777–785. https://doi.org/10.1093/cercor/bhn124
doi: 10.1093/cercor/bhn124
pubmed: 18669591
Markov NT, Misery P, Falchier A, Lamy C, Vezoli J, Quilodran R, Gariel MA, Giroud P, Ercsey-Ravasz M, Pilaz LJ, Huissoud C, Barone P, Dehay C, Toroczkai Z, Van Essen DC, Kennedy H, Knoblauch K (2011) Weight consistency specifies regularities of macaque cortical networks. Cereb Cortex 21:1254–1272. https://doi.org/10.1093/cercor/bhq201
doi: 10.1093/cercor/bhq201
pubmed: 21045004
Markov NT, Ercsey-Ravasz MM, Ribeiro Gomes AR, Lamy C, Magrou L, Vezoli J, Misery P, Falchier A, Quilodran R, Gariel MA, Sallet J, Gamanut R, Huissoud C, Clavagnier S, Giroud P, Sappey-Marinier D, Barone P, Dehay C, Toroczkai Z, Knoblauch K, Van Essen DC, Kennedy H (2014) A weighted and directed interareal connectivity matrix for macaque cerebral cortex. Cereb Cortex 24:17–36. https://doi.org/10.1093/cercor/bhs270
doi: 10.1093/cercor/bhs270
pubmed: 23010748
Mars RB, Passingham RE, Jbabdi S (2018a) Connectivity fingerprints: from areal descriptions to abstract spaces. Trends Cogn Sci 22:1026–1037. https://doi.org/10.1016/j.tics.2018.08.009
doi: 10.1016/j.tics.2018.08.009
pubmed: 30241910
pmcid: 6198109
Mars RB, Sotiropoulos SN, Passingham RE, Sallet J, Verhagen L, Khrapitchev AA, Sibson N, Jbabdi S (2018b) Whole brain comparative anatomy using connectivity blueprints. Elife 7:1–15. https://doi.org/10.7554/eLife.35237
doi: 10.7554/eLife.35237
Mars RB, Jbabdi S, Rushworth MFS (2021) A common space approach to comparative neuroscience. Annu Rev Neurosci 44:69–86. https://doi.org/10.1146/annurev-neuro-100220-025942
doi: 10.1146/annurev-neuro-100220-025942
pubmed: 33534614
McLaren DG, Kosmatka KJ, Oakes TR, Kroenke CD, Kohama SG, Matochik JA, Ingram DK, Johnson SC (2009) A population-average MRI-based atlas collection of the rhesus macaque. Neuroimage 45:52–59. https://doi.org/10.1016/j.neuroimage.2008.10.058
doi: 10.1016/j.neuroimage.2008.10.058
pubmed: 19059346
Milham MP, Ai L, Koo B, Xu T, Amiez C, Balezeau F, Baxter MG, Blezer ELA, Brochier T, Chen A, Croxson PL, Damatac CG, Dehaene S, Everling S, Fair DA, Fleysher L, Freiwald W, Froudist-Walsh S, Griffiths TD, Guedj C, Hadj-Bouziane F, Ben Hamed S, Harel N, Hiba B, Jarraya B, Jung B, Kastner S, Klink PC, Kwok SC, Laland KN, Leopold DA, Lindenfors P, Mars RB, Menon RS, Messinger A, Meunier M, Mok K, Morrison JH, Nacef J, Nagy J, Rios MO, Petkov CI, Pinsk M, Poirier C, Procyk E, Rajimehr R, Reader SM, Roelfsema PR, Rudko DA, Rushworth MFS, Russ BE, Sallet J, Schmid MC, Schwiedrzik CM, Seidlitz J, Sein J, Shmuel A, Sullivan EL, Ungerleider L, Thiele A, Todorov OS, Tsao D, Wang Z, Wilson CRE, Yacoub E, Ye FQ, Zarco W, Zhou Y, Margulies DS, Schroeder CE (2018) An open resource for non-human primate imaging. Neuron 100:61–74.e2. https://doi.org/10.1016/j.neuron.2018.08.039
Milham M, Petkov CI, Margulies DS, Schroeder CE, Basso MA, Belin P, Fair DA, Fox A, Kastner S, Mars RB, Messinger A, Poirier C, Vanduffel W, Van Essen DC, Alvand A, Becker Y, Ben Hamed S, Benn A, Bodin C, Boretius S, Cagna B, Coulon O, El-Gohary SH, Evrard H, Forkel SJ, Friedrich P, Froudist-Walsh S, Garza-Villarreal EA, Gao Y, Gozzi A, Grigis A, Hartig R, Hayashi T, Heuer K, Howells H, Ardesch DJ, Jarraya B, Jarrett W, Jedema HP, Kagan I, Kelly C, Kennedy H, Klink PC, Kwok SC, Leech R, Liu X, Madan C, Madushanka W, Majka P, Mallon A-M, Marche K, Meguerditchian A, Menon RS, Merchant H, Mitchell A, Nenning K-H, Nikolaidis A, Ortiz-Rios M, Pagani M, Pareek V, Prescott M, Procyk E, Rajimehr R, Rautu I-S, Raz A, Roe AW, Rossi-Pool R, Roumazeilles L, Sakai T, Sallet J, García-Saldivar P, Sato C, Sawiak S, Schiffer M, Schwiedrzik CM, Seidlitz J, Sein J, Shen Z, Shmuel A, Silva AC, Simone L, Sirmpilatze N, Sliwa J, Smallwood J, Tasserie J, Thiebaut De Schotten M, Toro R, Trapeau R, Uhrig L, Vezoli J, Wang Z, Wells S, Williams B, Xu T, Xu AG, Yacoub E, Zhan M, Ai L, Amiez C, Balezeau F, Baxter MG, Blezer ELA, Brochier T, Chen A, Croxson PL, Damatac CG, Dehaene S, Everling S, Fleysher L, Freiwald W, Griffiths TD, Guedj C, Hadj-Bouziane F, Harel N, Hiba B, Jung B, Koo B, Laland KN, Leopold DA, Lindenfors P, Meunier M, Mok K, Morrison JH, Nacef J, Nagy J, Pinsk M, Reader SM, Roelfsema PR, Rudko DA, Rushworth MFS, Russ BE, Schmid MC, Sullivan EL, Thiele A, Todorov OS, Tsao D, Ungerleider L, Wilson CRE, Ye FQ, Zarco W, Zhou Y (2020) Accelerating the evolution of nonhuman primate neuroimaging. Neuron 105:600–603. https://doi.org/10.1016/j.neuron.2019.12.023
doi: 10.1016/j.neuron.2019.12.023
Milham M, Petkov C, Belin P, Ben Hamed S, Evrard H, Fair D, Fox A, Froudist-Walsh S, Hayashi T, Kastner S, Klink C, Majka P, Mars R, Messinger A, Poirier C, Schroeder C, Shmuel A, Silva AC, Vanduffel W, Van Essen DC, Wang Z, Roe AW, Wilke M, Xu T, Aarabi MH, Adolphs R, Ahuja A, Alvand A, Amiez C, Autio J, Azadi R, Baeg E, Bai R, Bao P, Basso M, Behel AK, Bennett Y, Bernhardt B, Biswal B, Boopathy S, Boretius S, Borra E, Boshra R, Buffalo E, Cao L, Cavanaugh J, Celine A, Chavez G, Chen LM, Chen X, Cheng L, Chouinard-Decorte F, Clavagnier S, Cléry J, Colcombe SJ, Conway B, Cordeau M, Coulon O, Cui Y, Dadarwal R, Dahnke R, Desrochers T, Deying L, Dougherty K, Doyle H, Drzewiecki CM, Duyck M, Arachchi WE, Elorette C, Essamlali A, Evans A, Fajardo A, Figueroa H, Franco A, Freches G, Frey S, Friedrich P, Fujimoto A, Fukunaga M, Gacoin M, Gallardo G, Gao L, Gao Y, Garside D, Garza-Villarreal EA, Gaudet-Trafit M, Gerbella M, Giavasis S, Glen D, Ribeiro Gomes AR, Torrecilla SG, Gozzi A, Gulli R, Haber S, Hadj-Bouziane F, Fujimoto SH, Hawrylycz M, He Q, He Y, Heuer K, Hiba B, Hoffstaedter F, Hong S-J, Hori Y, Hou Y, Howard A, De La Iglesia-Vaya M, Ikeda T, Jankovic-Rapan L, Jaramillo J, Jedema HP, Jin H, Jiang M, Jung B, Kagan I, Kahn I, Kiar G, Kikuchi Y, Kilavik B, Kimura N, Klatzmann U, Kwok SC, Lai H-Y, Lamberton F, Lehman J, Li P, Li X, Li X, Liang Z, Liston C, Little R, Liu C, Liu N, Liu X, Liu X, Lu H, Loh KK, Madan C, Magrou L, Margulies D, Mathilda F, Mejia S, Meng Y, Menon R, Meunier D, Mitchell AJ, Mitchell A, Murphy A, Mvula T, Ortiz-Rios M, Ortuzar Martinez DE, Pagani M, Palomero-Gallagher N, Pareek V, Perkins P, Ponce F, Postans M, Pouget P, Qian M, Ramirez JB, Raven E, Restrepo I, Rima S, Rockland K, Rodriguez NY, Roger E, Hortelano ER, Rosa M, Rossi A, Rudebeck P, Russ B, Sakai T, Saleem KS, Sallet J, Sawiak S, Schaeffer D, Schwiedrzik CM, Seidlitz J, Sein J, Sharma J, Shen K, Sheng W, Shi NS, Shim WM, Simone L, Sirmpilatze N, Sivan V, Song X, Tanenbaum A, Tasserie J, Taylor P, Tian X, Toro R, Trambaiolli L, Upright N, Vezoli J, Vickery S, Villalon J, Wang X, Wang Y, Weiss AR, Wilson C, Wong T-Y, Woo C-W, Wu B, Xiao D, Xu AG, Xu D, Xufeng Z, Yacoub E, Ye N, Ying Z, Yokoyama C, Yu X, Yue S, Yuheng L, Yumeng X, Zaldivar D, Zhang S, Zhao Y, Zuo Z (2022) Toward next-generation primate neuroscience: a collaboration-based strategic plan for integrative neuroimaging. Neuron 110:16–20. https://doi.org/10.1016/j.neuron.2021.10.015
doi: 10.1016/j.neuron.2021.10.015
Passingham RE, Stephan KE, Kötter R (2002) The anatomical basis of functional localization in the cortex. Nat Rev Neurosci 3:606–616. https://doi.org/10.1038/nrn893
doi: 10.1038/nrn893
pubmed: 12154362
Paxinos G, Huang X, Toga A (2000) The Rhesus monkey brain in stereotaxic coordinates. Academic Press, San Diego
Petrides M, Pandya DN (1999) Dorsolateral prefrontal cortex: comparative cytoarchitectonic analysis in the human and the macaque brain and corticocortical connection patterns. Eur J Neurosci 11:1011–1036. https://doi.org/10.1046/j.1460-9568.1999.00518.x
doi: 10.1046/j.1460-9568.1999.00518.x
pubmed: 10103094
Petrides M, Pandya DN (2009) Distinct parietal and temporal pathways to the homologues of Broca’s area in the monkey. PLoS Biol 7:e1000170. https://doi.org/10.1371/journal.pbio.1000170
doi: 10.1371/journal.pbio.1000170
pubmed: 19668354
pmcid: 2714989
Reveley C, Gruslys A, Ye FQ, Glen D, Samaha J, Russ BE, Saad Z, Seth AK, Leopold DA, Saleem KS (2016) Three-dimensional digital template atlas of the macaque brain. Cereb Cortex 27(9):4463–4477. https://doi.org/10.1093/cercor/bhw248
doi: 10.1093/cercor/bhw248
pmcid: 6075609
Rilling JK, Glasser MF, Preuss TM, Ma X, Zhao T, Hu X, Behrens TEJ (2008) The evolution of the arcuate fasciculus revealed with comparative DTI. Nat Neurosci 11:426–428. https://doi.org/10.1038/nn2072
doi: 10.1038/nn2072
pubmed: 18344993
Rohlfing T, Kroenke CD, Sullivan EV, Dubach MF, Bowden DM, Grant KA, Pfefferbaum A (2012) The INIA19 template and NeuroMaps atlas for primate brain image parcellation and spatial normalization. Front Neuroinform 6:27. https://doi.org/10.3389/fninf.2012.00027
doi: 10.3389/fninf.2012.00027
pubmed: 23230398
pmcid: 3515865
Roumazeilles L, Eichert N, Bryant KL, Folloni D, Sallet J, Vijayakumar S, Foxley S, Tendler BC, Jbabdi S, Reveley C, Verhagen L, Dershowitz LB, Guthrie M, Flach E, Miller KL, Mars RB (2020) Longitudinal connections and the organization of the temporal cortex in macaques, great apes, and humans. PLoS Biol 18:e3000810. https://doi.org/10.1371/journal.pbio.3000810
doi: 10.1371/journal.pbio.3000810
pubmed: 32735557
pmcid: 7423156
Schaeffer DJ, Adam R, Gilbert KM, Gati JS, Li AX, Menon RS, Everling S (2017) Diffusion-weighted tractography in the common marmoset monkey at 9.4T. J Neurophysiol 118:1344–1354. https://doi.org/10.1152/jn.00259.2017
doi: 10.1152/jn.00259.2017
pubmed: 28615334
pmcid: 5558027
Seidlitz J, Sponheim C, Glen D, Ye FQ, Saleem KS, Leopold DA, Ungerleider L, Messinger A (2018) A population MRI brain template and analysis tools for the macaque. Neuroimage 170:121–131. https://doi.org/10.1016/j.neuroimage.2017.04.063
doi: 10.1016/j.neuroimage.2017.04.063
pubmed: 28461058
Sotiropoulos SN, Jbabdi S, Xu J, Andersson JL, Moeller S, Auerbach EJ, Glasser MF, Hernandez M, Sapiro G, Jenkinson M, Feinberg DA, Yacoub E, Lenglet C, Van Essen DC, Ugurbil K, Behrens TEJ (2013) Advances in diffusion MRI acquisition and processing in the Human Connectome Project. Neuroimage 80:125–143. https://doi.org/10.1016/j.neuroimage.2013.05.057
doi: 10.1016/j.neuroimage.2013.05.057
pubmed: 23702418
Stephan KE, Kamper L, Bozkurt A, Burns GAPC, Young MP, Kötter R (2001) Advanced database methodology for the collation of connectivity data on the macaque brain (CoCoMac). Philos Trans R Soc Lond B Biol Sci 356:1159–1186. https://doi.org/10.1098/rstb.2001.0908
doi: 10.1098/rstb.2001.0908
pubmed: 11545697
pmcid: 1088509
Takemura H, Pestilli F, Weiner KS, Keliris GA, Landi SM, Sliwa J, Ye FQ, Barnett MA, Leopold DA, Freiwald WA, Logothetis NK, Wandell BA (2017) Occipital white matter tracts in human and macaque. Cereb Cortex 27:3346–3359. https://doi.org/10.1093/cercor/bhx070
doi: 10.1093/cercor/bhx070
pubmed: 28369290
pmcid: 5890896
Thiebaut de Schotten M, Dell’Acqua F, Valabregue R, Catani M (2012) Monkey to human comparative anatomy of the frontal lobe association tracts. Cortex 48:82–96. https://doi.org/10.1016/j.cortex.2011.10.001
doi: 10.1016/j.cortex.2011.10.001
pubmed: 22088488
Van Essen DC (2002) Surface-based atlases of cerebellar cortex in the human, macaque, and mouse. Ann N Y Acad Sci 978:468–479. https://doi.org/10.1111/j.1749-6632.2002.tb07588.x
doi: 10.1111/j.1749-6632.2002.tb07588.x
pubmed: 12582074
Van Essen DC, Dierker DL (2007) Surface-based and probabilistic atlases of primate cerebral cortex. Neuron 56:209–225. https://doi.org/10.1016/j.neuron.2007.10.015
doi: 10.1016/j.neuron.2007.10.015
pubmed: 17964241
Van Essen DC, Lewis JW, Drury HA, Hadjikhani N, Tootell RBH, Bakircioglu M, Miller MI (2001) Mapping visual cortex in monkeys and humans using surface-based atlases. Vision Res 41:1359–1378. https://doi.org/10.1016/S0042-6989(01)00045-1
doi: 10.1016/S0042-6989(01)00045-1
pubmed: 11322980
Van Essen DC, Glasser MF, Dierker DL, Harwell J (2012) Cortical parcellations of the macaque monkey analyzed on surface-based atlases. Cereb Cortex 22:2227–2240. https://doi.org/10.1093/cercor/bhr290
doi: 10.1093/cercor/bhr290
pubmed: 22052704
Van Essen DC, Smith SM, Barch DM, Behrens TEJ, Yacoub E, Ugurbil K (2013) The WU-Minn Human Connectome Project: an overview. Neuroimage 80:62–79. https://doi.org/10.1016/j.neuroimage.2013.05.041
doi: 10.1016/j.neuroimage.2013.05.041
pubmed: 23684880
Wakana S, Jiang H, Nagae-Poetscher LM, van Zijl PCM, Mori S (2004) Fiber tract–based atlas of human white matter anatomy. Radiology 230:77–87. https://doi.org/10.1148/radiol.2301021640
doi: 10.1148/radiol.2301021640
pubmed: 14645885
Warrington S, Bryant KL, Khrapitchev AA, Sallet J, Charquero-Ballester M, Douaud G, Jbabdi S, Mars RB, Sotiropoulos SN (2020) XTRACT—standardised protocols for automated tractography in the human and macaque brain. Neuroimage 217:116923. https://doi.org/10.1016/j.neuroimage.2020.116923
doi: 10.1016/j.neuroimage.2020.116923
pubmed: 32407993
Warrington S, Thompson E, Bastiani M, Dubois J, Baxter L, Slater R, Jbabdi S, Mars RB, Sotiropoulos SN (2022) Concurrent mapping of brain ontogeny and phylogeny within a common space: standardized tractography and applications. Sci Adv 8:abq2022. https://doi.org/10.1126/sciadv.abq2022
doi: 10.1126/sciadv.abq2022
Xu T, Nenning K-H, Schwartz E, Hong S-J, Vogelstein JT, Goulas A, Fair DA, Schroeder CE, Margulies DS, Smallwood J, Milham MP, Langs G (2020) Cross-species functional alignment reveals evolutionary hierarchy within the connectome. Neuroimage 223:117346. https://doi.org/10.1016/j.neuroimage.2020.117346
doi: 10.1016/j.neuroimage.2020.117346
pubmed: 32916286
Xu R, Bichot NP, Takahashi A, Desimone R (2022) The cortical connectome of primate lateral prefrontal cortex. Neuron 110:312–327.e7. https://doi.org/10.1016/j.neuron.2021.10.018
Zhao J, Thiebaut de Schotten M, Altarelli I, Dubois J, Ramus F (2016) Altered hemispheric lateralization of white matter pathways in developmental dyslexia: evidence from spherical deconvolution tractography. Cortex 76:51–62. https://doi.org/10.1016/j.cortex.2015.12.004
doi: 10.1016/j.cortex.2015.12.004
pubmed: 26859852
Zimmermann J, Griffiths JD, McIntosh AR (2018) Unique mapping of structural and functional connectivity on cognition. J Neurosci 38:9658–9667. https://doi.org/10.1523/JNEUROSCI.0900-18.2018
doi: 10.1523/JNEUROSCI.0900-18.2018
pubmed: 30249801
pmcid: 6595988