Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors.

Backprojection Deep learning Maximum intensity projection Medical image analysis Segmentation prior Whole-body tumor segmentation

Journal

Heliyon
ISSN: 2405-8440
Titre abrégé: Heliyon
Pays: England
ID NLM: 101672560

Informations de publication

Date de publication:
29 Feb 2024
Historique:
received: 14 11 2023
revised: 09 02 2024
accepted: 13 02 2024
medline: 23 2 2024
pubmed: 23 2 2024
entrez: 23 2 2024
Statut: epublish

Résumé

Early cancer detection, guided by whole-body imaging, is important for the overall survival and well-being of the patients. While various computer-assisted systems have been developed to expedite and enhance cancer diagnostics and longitudinal monitoring, the detection and segmentation of tumors, especially from whole-body scans, remain challenging. To address this, we propose a novel end-to-end automated framework that first generates a tumor probability distribution map (TPDM), incorporating prior information about the tumor characteristics (e.g. size, shape, location). Subsequently, the TPDM is integrated with a state-of-the-art 3D segmentation network along with the original PET/CT or PET/MR images. This aims to produce more meaningful tumor segmentation masks compared to using the baseline 3D segmentation network alone. The proposed method was evaluated on three independent cohorts (autoPET, CAR-T, cHL) of images containing different cancer forms, obtained with different imaging modalities, and acquisition parameters and lesions annotated by different experts. The evaluation demonstrated the superiority of our proposed method over the baseline model by significant margins in terms of Dice coefficient, and lesion-wise sensitivity and precision. Many of the extremely small tumor lesions (i.e. the most difficult to segment) were missed by the baseline model but detected by the proposed model without additional false positives, resulting in clinically more relevant assessments. On average, an improvement of 0.0251 (autoPET), 0.144 (CAR-T), and 0.0528 (cHL) in overall Dice was observed. In conclusion, the proposed TPDM-based approach can be integrated with any state-of-the-art 3D UNET with potentially more accurate and robust segmentation results.

Identifiants

pubmed: 38390107
doi: 10.1016/j.heliyon.2024.e26414
pii: S2405-8440(24)02445-9
pmc: PMC10882139
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e26414

Informations de copyright

© 2024 The Authors.

Déclaration de conflit d'intérêts

Joel Kullberg and Håkan Ahlström reports a relationship with Antaros Medical AB that includes: employment and equity or stocks. Joel Kullberg also has patent pending to Assignee. All other authors have no competing interests.The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Joel Kullberg reports a relationship with Antaros Medical AB that includes: employment and equity or stocks. Hakan Ahlstrom reports a relationship with Antaros Medical AB that includes: employment and equity or stocks. Joel Kullberg has patent pending to Assignee.

Auteurs

Sambit Tarai (S)

Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.

Elin Lundström (E)

Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.

Therese Sjöholm (T)

Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.

Hanna Jönsson (H)

Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.

Alexander Korenyushkin (A)

Antaros Medical AB, SE-43153, Mölndal, Sweden.

Nouman Ahmad (N)

Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.

Mette A Pedersen (MA)

Department of Nuclear Medicine & PET-Centre, Aarhus University Hospital, 8200 Aarhus N, Denmark.
Department of Biomedicine, Aarhus University, 8000 Aarhus C, Denmark.
Steno Diabetes Center Aarhus, Aarhus University Hospital, 8200 Aarhus N, Denmark.

Daniel Molin (D)

Department of Immunology, Genetics and Pathology, Uppsala University, SE-75185 Uppsala, Sweden.

Gunilla Enblad (G)

Department of Immunology, Genetics and Pathology, Uppsala University, SE-75185 Uppsala, Sweden.

Robin Strand (R)

Department of Information Technology, Uppsala University, SE-75237, Uppsala, Sweden.

Håkan Ahlström (H)

Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.
Antaros Medical AB, SE-43153, Mölndal, Sweden.

Joel Kullberg (J)

Department of Surgical Sciences, Uppsala University, SE-75185, Uppsala, Sweden.
Antaros Medical AB, SE-43153, Mölndal, Sweden.

Classifications MeSH