Meta-Transcriptomic Analysis Uncovers the Presence of Four Novel Viruses and Multiple Known Virus Genera in a Single
carlavirus
cilevirus
hibiscus viruses
high-throughput sequencing
nepovirus
potexvirus
soymovirus
virus discovery
Journal
Viruses
ISSN: 1999-4915
Titre abrégé: Viruses
Pays: Switzerland
ID NLM: 101509722
Informations de publication
Date de publication:
07 Feb 2024
07 Feb 2024
Historique:
received:
14
01
2024
revised:
31
01
2024
accepted:
01
02
2024
medline:
24
2
2024
pubmed:
24
2
2024
entrez:
24
2
2024
Statut:
epublish
Résumé
Hibiscus is not native to Colombia but well suited to its arid soil and dry climates. A single hibiscus plant from Risaralda, showing black spots on upper and lower sides of its leaves, was collected for virome analysis using meta-transcriptomic high-throughput sequencing technology. Bioinformatic analysis identified 12.5% of the total reads in the Ribo-Zero cDNA library which mapped to viral genomes. BLAST searches revealed the presence of carlavirus, potexvirus, and of known members of the genera
Identifiants
pubmed: 38400042
pii: v16020267
doi: 10.3390/v16020267
pii:
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Subventions
Organisme : USDA-ARS in-House Appropriated project
ID : NP303-8042-22000-319-000-D
Organisme : Citrus Health Response Program (CHRP)
ID : PPQ-013258