Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients.

B cell lymphoma RNA-seq cancer-associated fibroblasts human lymph node immunology integrated analysis multi-omic single-cell atlas spatial proteomics tumor microenvironment tumor progression

Journal

Cancer cell
ISSN: 1878-3686
Titre abrégé: Cancer Cell
Pays: United States
ID NLM: 101130617

Informations de publication

Date de publication:
21 Feb 2024
Historique:
received: 19 07 2022
revised: 04 12 2023
accepted: 05 02 2024
medline: 2 3 2024
pubmed: 2 3 2024
entrez: 1 3 2024
Statut: aheadofprint

Résumé

Follicular lymphoma (FL) is a generally incurable malignancy that evolves from developmentally blocked germinal center (GC) B cells. To promote survival and immune escape, tumor B cells undergo significant genetic changes and extensively remodel the lymphoid microenvironment. Dynamic interactions between tumor B cells and the tumor microenvironment (TME) are hypothesized to contribute to the broad spectrum of clinical behaviors observed among FL patients. Despite the urgent need, existing clinical tools do not reliably predict disease behavior. Using a multi-modal strategy, we examined cell-intrinsic and -extrinsic factors governing progression and therapeutic outcomes in FL patients enrolled onto a prospective clinical trial. By leveraging the strengths of each platform, we identify several tumor-specific features and microenvironmental patterns enriched in individuals who experience early relapse, the most high-risk FL patients. These features include stromal desmoplasia and changes to the follicular growth pattern present 20 months before first progression and first relapse.

Identifiants

pubmed: 38428410
pii: S1535-6108(24)00045-X
doi: 10.1016/j.ccell.2024.02.001
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

Published by Elsevier Inc.

Déclaration de conflit d'intérêts

Declaration of interests N.F. is the Chief Medical Officer of BostonGene, Corp., and all authors affiliated with BostonGene, Corp. were employees thereof at the time the study was performed. E.P., A.V., A.B., I.G., V.S., A. Sarachakov, P.O., N.K., and R.A. are inventors of patents related to this work. A.L.S. is an employee and shareholder of AstraZeneca. The follicular lymphoma samples collection conducted at NIAID, NIH, was an investigator-initiated project funded by NIAID, NIH.

Auteurs

Andrea J Radtke (AJ)

Lymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, MD 20892, USA. Electronic address: andrea.radtke@nih.gov.

Ekaterina Postovalova (E)

BostonGene, Waltham, MA 02453, USA.

Arina Varlamova (A)

BostonGene, Waltham, MA 02453, USA.

Alexander Bagaev (A)

BostonGene, Waltham, MA 02453, USA.

Maria Sorokina (M)

BostonGene, Waltham, MA 02453, USA.

Olga Kudryashova (O)

BostonGene, Waltham, MA 02453, USA.

Mark Meerson (M)

BostonGene, Waltham, MA 02453, USA.

Margarita Polyakova (M)

BostonGene, Waltham, MA 02453, USA.

Ilia Galkin (I)

BostonGene, Waltham, MA 02453, USA.

Viktor Svekolkin (V)

BostonGene, Waltham, MA 02453, USA.

Sergey Isaev (S)

BostonGene, Waltham, MA 02453, USA.

Daniil Wiebe (D)

BostonGene, Waltham, MA 02453, USA.

Anna Sharun (A)

BostonGene, Waltham, MA 02453, USA.

Alexander Sarachakov (A)

BostonGene, Waltham, MA 02453, USA.

Grigory Perelman (G)

BostonGene, Waltham, MA 02453, USA.

Yaroslav Lozinsky (Y)

BostonGene, Waltham, MA 02453, USA.

Ziv Yaniv (Z)

Bioinformatics and Computational Bioscience Branch, NIAID, NIH, Bethesda, MD 20892, USA.

Bradley C Lowekamp (BC)

Bioinformatics and Computational Bioscience Branch, NIAID, NIH, Bethesda, MD 20892, USA.

Emily Speranza (E)

Lymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, MD 20892, USA; Florida Research and Innovation Center, Cleveland Clinic Lerner Research Institute, Port Saint Lucie, FL 34987, USA.

Li Yao (L)

Li Yao Visuals, Rockville, MD 20855, USA.

Stefania Pittaluga (S)

Laboratory of Pathology, NCI, NIH, Bethesda, MD 20892, USA.

Arthur L Shaffer (AL)

Lymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA; Tumor Targeted Delivery, Heme Malignancy Target Discovery Group, AstraZeneca, Gaithersburg, MD 20878, USA.

Danny Jonigk (D)

Institute of Pathology, Aachen Medical University, RWTH Aachen, 52074 Aachen, Germany; German Center for Lung Research (DZL), Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), 30625 Hannover, Germany.

James D Phelan (JD)

Lymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.

Theresa Davies-Hill (T)

Laboratory of Pathology, NCI, NIH, Bethesda, MD 20892, USA.

Da Wei Huang (DW)

Lymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.

Pavel Ovcharov (P)

BostonGene, Waltham, MA 02453, USA.

Krystle Nomie (K)

BostonGene, Waltham, MA 02453, USA.

Ekaterina Nuzhdina (E)

BostonGene, Waltham, MA 02453, USA.

Nikita Kotlov (N)

BostonGene, Waltham, MA 02453, USA.

Ravshan Ataullakhanov (R)

BostonGene, Waltham, MA 02453, USA.

Nathan Fowler (N)

BostonGene, Waltham, MA 02453, USA.

Michael Kelly (M)

CCR Single Analysis Facility, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Bethesda, MD 20892, USA.

Jagan Muppidi (J)

Lymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.

Jeremy L Davis (JL)

Surgical Oncology Program, Metastasis Biology Section, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

Jonathan M Hernandez (JM)

Surgical Oncology Program, Metastasis Biology Section, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

Wyndham H Wilson (WH)

Lymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.

Elaine S Jaffe (ES)

Laboratory of Pathology, NCI, NIH, Bethesda, MD 20892, USA.

Louis M Staudt (LM)

Lymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.

Mark Roschewski (M)

Lymphoid Malignancies Branch, NCI, NIH, Bethesda, MD 20892, USA.

Ronald N Germain (RN)

Lymphocyte Biology Section and Center for Advanced Tissue Imaging, Laboratory of Immune System Biology, NIAID, NIH, Bethesda, MD 20892, USA.

Classifications MeSH