Phylogenomics reveals extensive misidentification of fungal strains from the genus

Aspergillaceae Penicillium genomics pathogen pathogenicity plant pathogen taxogenomics taxonomy virulence

Journal

Microbiology spectrum
ISSN: 2165-0497
Titre abrégé: Microbiol Spectr
Pays: United States
ID NLM: 101634614

Informations de publication

Date de publication:
06 Mar 2024
Historique:
medline: 6 3 2024
pubmed: 6 3 2024
entrez: 6 3 2024
Statut: aheadofprint

Résumé

Modern taxonomic classification is often based on phylogenetic analyses of a few molecular markers, although single-gene studies are still common. Here, we leverage genome-scale molecular phylogenetics (phylogenomics) of species and populations to reconstruct evolutionary relationships in a dense data set of 710 fungal genomes from the biomedically and technologically important genus

Identifiants

DOI: 10.1128/spectrum.03980-23 PMID: 38445873
pubmed: 38445873
doi: 10.1128/spectrum.03980-23
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

e0398023

Auteurs

Jacob L Steenwyk (JL)

Howards Hughes Medical Institute and the Department of Molecular and Cell Biology, University of California, Berkeley, California, USA.
Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA.
Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, USA.
ORCID: 0000-0002-8436-595X

Charu Balamurugan (C)

Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA.
Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, USA.

Huzefa A Raja (HA)

Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, North Carolina, USA.
ORCID: 0000-0002-0824-9463

Carla Gonçalves (C)

Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA.
Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, USA.

Ningxiao Li (N)

Department of Plant Pathology, University of California, Davis, California, USA.
USDA-ARS, Salinas, California, USA.
ORCID: 0000-0002-7847-3567

Frank Martin (F)

USDA-ARS, Salinas, California, USA.

Judith Berman (J)

Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel.
ORCID: 0000-0002-8577-0084

Nicholas H Oberlies (NH)

Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, North Carolina, USA.
ORCID: 0000-0002-0354-8464

John G Gibbons (JG)

Department of Food Science, University of Massachusetts, Amherst, Massachusetts, USA.
Molecular and Cellular Biology Graduate Program, University of Massachusetts, Amherst, Massachusetts, USA.
Organismic and Evolutionary Biology Graduate Program, University of Massachusetts, Amherst, Massachusetts, USA.
ORCID: 0000-0003-1282-9345

Gustavo H Goldman (GH)

Faculdade de Ciencias Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, São Paulo, Brazil.
ORCID: 0000-0002-2986-350X

David M Geiser (DM)

Department of Plant Pathology and Environmental Microbiology, Penn State University, University Park, Pennsylvania, USA.

Jos Houbraken (J)

Food and Indoor Mycology, Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands.

David S Hibbett (DS)

Biology Department, Clark University, Worcester, Massachusetts, USA.
ORCID: 0000-0002-9145-3165

Antonis Rokas (A)

Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA.
Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, USA.
Heidelberg Institute for Theoretical Studies, Schloss-Wolfsbrunnenweg, Heidelberg, Germany.
ORCID: 0000-0002-7248-6551

Classifications MeSH