De novo assembly and annotation of Popillia japonica's genome with initial clues to its potential as an invasive pest.
Beetles
Cytochrome P450
Gustatory receptors
Invasive species
Ionotropic receptors
Japanese beetle
Odorant receptors
Journal
BMC genomics
ISSN: 1471-2164
Titre abrégé: BMC Genomics
Pays: England
ID NLM: 100965258
Informations de publication
Date de publication:
13 Mar 2024
13 Mar 2024
Historique:
received:
22
11
2023
accepted:
04
03
2024
medline:
13
3
2024
pubmed:
13
3
2024
entrez:
13
3
2024
Statut:
epublish
Résumé
The spread of Popillia japonica in non-native areas (USA, Canada, the Azores islands, Italy and Switzerland) poses a significant threat to agriculture and horticulture, as well as to endemic floral biodiversity, entailing that appropriate control measures must be taken to reduce its density and limit its further spread. In this context, the availability of a high quality genomic sequence for the species is liable to foster basic research on the ecology and evolution of the species, as well as on possible biotechnologically-oriented and genetically-informed control measures. The genomic sequence presented and described here is an improvement with respect to the available draft sequence in terms of completeness and contiguity, and includes structural and functional annotations. A comparative analysis of gene families of interest, related to the species ecology and potential for polyphagy and adaptability, revealed a contraction of gustatory receptor genes and a paralogous expansion of some subgroups/subfamilies of odorant receptors, ionotropic receptors and cytochrome P450s. The new genomic sequence as well as the comparative analyses data may provide a clue to explain the staggering invasive potential of the species and may serve to identify targets for potential biotechnological applications aimed at its control.
Sections du résumé
BACKGROUND
BACKGROUND
The spread of Popillia japonica in non-native areas (USA, Canada, the Azores islands, Italy and Switzerland) poses a significant threat to agriculture and horticulture, as well as to endemic floral biodiversity, entailing that appropriate control measures must be taken to reduce its density and limit its further spread. In this context, the availability of a high quality genomic sequence for the species is liable to foster basic research on the ecology and evolution of the species, as well as on possible biotechnologically-oriented and genetically-informed control measures.
RESULTS
RESULTS
The genomic sequence presented and described here is an improvement with respect to the available draft sequence in terms of completeness and contiguity, and includes structural and functional annotations. A comparative analysis of gene families of interest, related to the species ecology and potential for polyphagy and adaptability, revealed a contraction of gustatory receptor genes and a paralogous expansion of some subgroups/subfamilies of odorant receptors, ionotropic receptors and cytochrome P450s.
CONCLUSIONS
CONCLUSIONS
The new genomic sequence as well as the comparative analyses data may provide a clue to explain the staggering invasive potential of the species and may serve to identify targets for potential biotechnological applications aimed at its control.
Identifiants
pubmed: 38475721
doi: 10.1186/s12864-024-10180-x
pii: 10.1186/s12864-024-10180-x
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
275Subventions
Organisme : Horizon 2020 Framework Programme
ID : 861852
Organisme : Horizon 2020 Framework Programme
ID : 861852
Organisme : Horizon 2020 Framework Programme
ID : 861852
Organisme : Ministero dell'Istruzione, dell'Università e della Ricerca
ID : CN00000033
Organisme : Ministero dell'Istruzione, dell'Università e della Ricerca
ID : CN00000033
Organisme : Ministero dell'Istruzione, dell'Università e della Ricerca
ID : CN00000033
Informations de copyright
© 2024. The Author(s).
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