A global phosphosite-correlated network map of Thousand And One Kinase 1 (TAOK1).

Co-regulated phosphosites Interactions Kinase-substrate Network analysis Phosphoproteomics Phosphosite TAOK1

Journal

The international journal of biochemistry & cell biology
ISSN: 1878-5875
Titre abrégé: Int J Biochem Cell Biol
Pays: Netherlands
ID NLM: 9508482

Informations de publication

Date de publication:
11 Mar 2024
Historique:
received: 12 08 2023
revised: 19 02 2024
accepted: 09 03 2024
medline: 14 3 2024
pubmed: 14 3 2024
entrez: 13 3 2024
Statut: aheadofprint

Résumé

Thousand and one amino acid kinase 1 (TAOK1) is a sterile 20 family Serine/Threonine kinase linked to microtubule dynamics, checkpoint signaling, DNA damage response, and neurological functions. Molecular-level alterations of TAOK1 have been associated with neurodevelopment disorders and cancers. Despite their known involvement in physiological and pathophysiological processes, and as a core member of the hippo signaling pathway, the phosphoregulatory network of TAOK1 has not been visualized. Aimed to explore this network, we first analyzed the predominantly detected and differentially regulated TAOK1 phosphosites in global phosphoproteome datasets across diverse experimental conditions. Based on 709 qualitative and 210 quantitative differential cellular phosphoproteome datasets that were systematically assembled, we identified that phosphorylation at Ser421, Ser9, Ser965, and Ser445 predominantly represented TAOK1 in almost 75% of these datasets. Surprisingly, the functional role of all these phosphosites in TAOK1 remains unexplored. Hence, we employed a robust strategy to extract the phosphosites in proteins that significantly correlated in expression with predominant TAOK1 phosphosites. This led to the first categorization of the phosphosites including those in the currently known and predicted interactors, kinases, and substrates, that positively/negatively correlated with the expression status of each predominant TAOK1 phosphosites. Subsequently, we also analyzed the phosphosites in core proteins of the hippo signaling pathway. Based on the TAOK1 phosphoregulatory network analysis, we inferred the potential role of the predominant TAOK1 phosphosites. Especially, we propose pSer9 as an autophosphorylation and TAOK1 kinase activity-associated phosphosite and pS421, the most frequently detected phosphosite in TAOK1, as a significant regulatory phosphosite involved in the maintenance of genome integrity. Considering that the impact of all phosphosites that predominantly represent each kinase is essential for the efficient interpretation of global phosphoproteome datasets, we believe that the approach undertaken in this study is suitable to be extended to other kinases for accelerated research.

Identifiants

pubmed: 38479581
pii: S1357-2725(24)00049-9
doi: 10.1016/j.biocel.2024.106558
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

106558

Informations de copyright

Copyright © 2024 Elsevier Ltd. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest none

Auteurs

Pahal Priyanka (P)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: priyanka.ciods@yenepoya.edu.in.

Athira Perunelly Gopalakrishnan (AP)

Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: athirajrf@yenepoya.edu.in.

Mahammad Nisar (M)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: nisar.ciods@yenepoya.edu.in.

Prathik Basthikoppa Shivamurthy (PB)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: prathikbsgowda@gmail.com.

Mejo George (M)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: mejogeorge.ciods@yenepoya.edu.in.

Levin John (L)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: levinjohn.ciods@yenepoya.edu.in.

Diya Sanjeev (D)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: diya.ciods@yenepoya.edu.in.

Tanuja Yandigeri (T)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: tanujayandigeri93@gmail.com.

Sonet D Thomas (SD)

Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: sonusrt2112@gmail.com.

Ahmad Rafi (A)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: ahdrafi1486@gmail.com.

Shobha Dagamajalu (S)

Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: shobha_d@yenepoya.edu.in.

Anoop Kumar G Velikkakath (AKG)

Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: ano.p47@gmail.com.

Chandran S Abhinand (CS)

Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: abhinandcs@yenepoya.edu.in.

Saptami Kanekar (S)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: saptamiuk.ciods@yenepoya.edu.in.

Thottethodi Subrahmanya Keshava Prasad (TSK)

Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: keshav@yenepoya.edu.in.

Rex Devasahayam Arokia Balaya (RDA)

Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: rexprem@yenepoya.edu.in.

Rajesh Raju (R)

Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India. Electronic address: rajeshraju@yenepoya.edu.in.

Classifications MeSH