TAT-HUM: Trajectory analysis toolkit for human movements in Python.
Human movement analysis
Kinematic analysis
Python library
Spatial cueing paradigm
Trajectory analysis
Journal
Behavior research methods
ISSN: 1554-3528
Titre abrégé: Behav Res Methods
Pays: United States
ID NLM: 101244316
Informations de publication
Date de publication:
19 Mar 2024
19 Mar 2024
Historique:
accepted:
21
02
2024
medline:
20
3
2024
pubmed:
20
3
2024
entrez:
20
3
2024
Statut:
aheadofprint
Résumé
Human movement trajectories can reveal useful insights regarding the underlying mechanisms of human behaviors. Extracting information from movement trajectories, however, can be challenging because of their complex and dynamic nature. The current paper presents a Python toolkit developed to help users analyze and extract meaningful information from the trajectories of discrete rapid aiming movements executed by humans. This toolkit uses various open-source Python libraries, such as NumPy and SciPy, and offers a collection of common functionalities to analyze movement trajectory data. To ensure flexibility and ease of use, the toolkit offers two approaches: an automated approach that processes raw data and generates relevant measures automatically, and a manual approach that allows users to selectively use different functions based on their specific needs. A behavioral experiment based on the spatial cueing paradigm was conducted to illustrate how one can use this toolkit in practice. Readers are encouraged to access the publicly available data and relevant analysis scripts as an opportunity to learn about kinematic analysis for human movements.
Identifiants
pubmed: 38504077
doi: 10.3758/s13428-024-02378-4
pii: 10.3758/s13428-024-02378-4
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
© 2024. The Psychonomic Society, Inc.
Références
Ayala, M. N., & Henriques, D. Y. (2021). Differential contributions of implicit and explicit learning mechanisms to various contextual cues in dual adaptation. PLoS One, 16(7), e0253948.
pubmed: 34237082
pmcid: 8266054
doi: 10.1371/journal.pone.0253948
Bartlett, R. (2014). Introduction to sports biomechanics: Analysing human movement patterns. Routledge.
doi: 10.4324/9781315889504
Bazarevsky, V., Grishchenko, I., Raveendran, K., Zhu, T., Zhang, F., & Grundmann, M. (2020). BlazePose: On-device Real-time Body Pose tracking. CoRR, abs/2006.10204. Retrieved from https://arxiv.org/abs/2006.10204 . Accessed 17 Oct 2022.
Bingham, G. P., & Pagano, C. C. (1998). The necessity of a perception–action approach to definite distance perception: Monocular distance perception to guide reaching. Journal of Experimental Psychology: Human Perception and Performance, 24(1), 145.
pubmed: 9483825
Bingham, G. P., Herth, R. A., Yang, P., Chen, Z., & Wang, X. M. (2022). Investigation of optical texture properties as relative distance information for monocular guidance of reaching. Vision Research, 196, 108029.
pubmed: 35248890
doi: 10.1016/j.visres.2022.108029
Bingham, G. P., Wang, X. M., & Herth, R. A. (2023). Stable visually guided reaching does not require an internal feedforward model to compensate for internal delay: Data and model. Vision Research, 203, 108152. https://doi.org/10.1016/j.visres.2022.108152
doi: 10.1016/j.visres.2022.108152
pubmed: 36442368
Bourgaize, S. M., McFadyen, B. J., & Cinelli, M. E. (2021). Collision avoidance behaviours when circumventing people of different sizes in various positions and locations. Journal of Motor Behavior, 53(2), 166–175.
pubmed: 32188359
doi: 10.1080/00222895.2020.1742083
Brenner, E., & Smeets, J. B. (2019). How can you best measure reaction times? Journal of Motor Behavior, 51(5), 486–495.
pubmed: 30358504
doi: 10.1080/00222895.2018.1518311
Butterworth, S. (1930). On the theory of filter amplifiers. Wireless Engineer, 7(6), 536–541.
Cappello, A., La Palombara, P. F., & Leardini, A. (1996). Optimization and smoothing techniques in movement analysis. International Journal of Bio-Medical Computing, 41(3), 137–151.
pubmed: 8872190
doi: 10.1016/0020-7101(96)01167-1
Chang, E., & Ro, T. (2005). Inhibition of return in perception and action. Visual Cognition, 12(3), 443–472.
doi: 10.1080/13506280444000391
Cisek, P., & Kalaska, J. F. (2005). Neural correlates of reaching decisions in dorsal premotor cortex: Specification of multiple direction choices and final selection of action. Neuron, 45(5), 801–814.
pubmed: 15748854
doi: 10.1016/j.neuron.2005.01.027
Cisek, P., & Kalaska, J. F. (2010). Neural mechanisms for interacting with a world full of action choices. Annual Review of Neuroscience, 33, 269–298.
pubmed: 20345247
doi: 10.1146/annurev.neuro.051508.135409
Donders, F. C. (1969). On the speed of mental processes. Acta Psychologica, 30, 412–431.
pubmed: 5811531
doi: 10.1016/0001-6918(69)90065-1
Elliott, D., Hansen, S., Grierson, L. E., Lyons, J., Bennett, S. J., & Hayes, S. J. (2010). Goal-directed aiming: Two components but multiple processes. Psychological Bulletin, 136(6), 1023.
pubmed: 20822209
doi: 10.1037/a0020958
Fagioli, S., Hommel, B., & Schubotz, R. I. (2007). Intentional control of attention: Action planning primes action-related stimulus dimensions. Psychological Research, 71, 22–29.
pubmed: 16317565
doi: 10.1007/s00426-005-0033-3
Faul, F., Erdfelder, E., Lang, A.-G., & Buchner, A. (2007). G*Power 3: A flexible statistical power analysis program for the social, behavioral, and biomedical sciences. Behavior Research Methods, 39(2), 175–191. https://doi.org/10.3758/BF03193146
doi: 10.3758/BF03193146
pubmed: 17695343
Faul, F., Erdfelder, E., Buchner, A., & Lang, A.-G. (2009). Statistical power analyses using G*Power 3.1: Tests for correlation and regression analyses. Behavior Research Methods, 41(4), 1149–1160. https://doi.org/10.3758/BRM.41.4.1149
doi: 10.3758/BRM.41.4.1149
pubmed: 19897823
Friesen, C. K., & Kingstone, A. (1998). The eyes have it! Reflexive orienting is triggered by nonpredictive gaze. Psychonomic Bulletin & Review, 5(3), 490–495. https://doi.org/10.3758/BF03208827
doi: 10.3758/BF03208827
Frischen, A., Bayliss, A. P., & Tipper, S. P. (2007). Gaze cueing of attention: Visual attention, social cognition, and individual differences. Psychological Bulletin, 133(4), 694–724. https://doi.org/10.1037/0033-2909.133.4.694
doi: 10.1037/0033-2909.133.4.694
pubmed: 17592962
pmcid: 1950440
Gallivan, J. P., Chapman, C. S., Wolpert, D. M., & Flanagan, J. R. (2018). Decision-making in sensorimotor control. Nature Reviews Neuroscience, 19(9), 9. https://doi.org/10.1038/s41583-018-0045-9
doi: 10.1038/s41583-018-0045-9
Gallivan, J. P., & Chapman, C. S. (2014). Three-dimensional reach trajectories as a probe of real-time decision-making between multiple competing targets. Frontiers in Neuroscience, 8. https://doi.org/10.3389/fnins.2014.00215
Ghose, U., Srinivasan, A. A., Boyce, W. P., Xu, H., & Chng, E. S. (2020). PyTrack: An end-to-end analysis toolkit for eye tracking. Behavior Research Methods, 52, 2588–2603.
pubmed: 32500364
pmcid: 7725757
doi: 10.3758/s13428-020-01392-6
Gram, J. P. (1883). Ueber die Entwickelung reeller Functionen in Reihen mittelst der Methode der kleinsten Quadrate. Journal für die Reine und Angewandte Mathematik, 94, 41–73.
Grierson, L. E., Gonzalez, C., & Elliott, D. (2009). Kinematic analysis of early online control of goal-directed reaches: A novel movement perturbation study. Motor Control, 13(3), 280–296.
pubmed: 19799166
doi: 10.1123/mcj.13.3.280
Handlovsky, I., Hansen, S., Lee, T. D., & Elliott, D. (2004). The Ebbinghaus illusion affects on-line movement control. Neuroscience Letters, 366(3), 308–311.
pubmed: 15288440
doi: 10.1016/j.neulet.2004.05.056
Heath, M., Westwood, D. A., & Binsted, G. (2004). The control of memory-guided reaching movements in peripersonal space. Motor Control, 8(1), 76–106.
pubmed: 14973339
doi: 10.1123/mcj.8.1.76
Heath, M., Rival, C., Neely, K., & Krigolson, O. (2006). Müller-Lyer figures influence the online reorganization of visually guided grasping movements. Experimental Brain Research, 169, 473–481.
pubmed: 16292638
doi: 10.1007/s00221-005-0170-3
Hommel, B., Müsseler, J., Aschersleben, G., & Prinz, W. (2001). The theory of event coding (TEC): A framework for perception and action planning. Behavioral and Brain Sciences, 24(5), 849–878.
pubmed: 12239891
doi: 10.1017/S0140525X01000103
Howard, L. A., & Tipper, S. (1997). Hand deviations away from visual cues: Indirect evidence for inhibition. Experimental Brain Research, 113(1), 144–152.
pubmed: 9028783
doi: 10.1007/BF02454150
Howard, L. A., Lupiáñez, J., & Tipper, S. P. (1999). Inhibition of return in a selective reaching task: An investigation of reference frames. The Journal of General Psychology, 126(4), 421–442.
pubmed: 10555868
doi: 10.1080/00221309909595374
Ishihara, M., Jacquin-Courtois, S., Flory, V., Salemme, R., Imanaka, K., & Rossetti, Y. (2006). Interaction between space and number representations during motor preparation in manual aiming. Neuropsychologia, 44(7), 1009–1016.
pubmed: 16406028
doi: 10.1016/j.neuropsychologia.2005.11.008
Klein, R. M. (2000). Inhibition of return. Trends in Cognitive Sciences, 4(4), 138–147.
pubmed: 10740278
doi: 10.1016/S1364-6613(00)01452-2
Lanshammar, H. (1982). On precision limits for derivatives numerically calculated from noisy data. Journal of Biomechanics, 15(6), 459–470.
pubmed: 7118960
doi: 10.1016/0021-9290(82)90082-3
Larssen, B., Greeley, B., & Boyd, L. (2023). Are bilateral motor planning impairments during reverse visually guided reaching evidence of cognitive-motor impairment or a motor control strategy among stroke survivors and older adults? Journal of Exercise, Movement, and Sport (SCAPPS Refereed Abstracts Repository), 54(1).
Lee, D. (1999). Effects of exogenous and endogenous attention on visually guided hand movements. Cognitive Brain Research, 8(2), 143–156.
pubmed: 10407203
doi: 10.1016/S0926-6410(99)00014-2
Manzone, D. M., Manzone, J. X., Wang, X. M., Welsh, T. N., & Tremblay, L. (2023). Test Tube: On the Sensorimotor Costs of Virtual Environments. Journal of Exercise, Movement, and Sport (SCAPPS Refereed Abstracts Repository), 54(1).
Nashed, J. Y., Crevecoeur, F., & Scott, S. H. (2012). Influence of the behavioral goal and environmental obstacles on rapid feedback responses. Journal of Neurophysiology, 108(4), 999–1009.
pubmed: 22623483
doi: 10.1152/jn.01089.2011
Neyedli, H. F., & Welsh, T. N. (2012). The processes of facilitation and inhibition in a cue–target paradigm: Insight from movement trajectory deviations. Acta Psychologica, 139(1), 159–165. https://doi.org/10.1016/j.actpsy.2011.11.001
doi: 10.1016/j.actpsy.2011.11.001
pubmed: 22133725
Pedregosa, F., Varoquaux, G., Gramfort, A., Michel, V., Thirion, B., Grisel, O., ..., & Cournapeau, D. (2011). Scikit-learn: Machine Learning in Python. Journal of Machine Learning, 12, 2825–2830.
Peirce, J., Gray, J. R., Simpson, S., MacAskill, M., Höchenberger, R., Sogo, H., ..., & Lindeløv, J. K. (2019). PsychoPy2: Experiments in behavior made easy. Behavior Research Methods, 51(1), 195–203.
pubmed: 30734206
pmcid: 6420413
doi: 10.3758/s13428-018-01193-y
Posner, M. I. (1980). Orienting of Attention. Quarterly Journal of Experimental Psychology, 32(1), 3–25. https://doi.org/10.1080/00335558008248231
doi: 10.1080/00335558008248231
pubmed: 7367577
Posner, M. I., & Cohen, Y. (1984). Components of visual orienting. Attention and Performance X: Control of Language Processes, 32, 531–556.
Posner, M. I., Rafal, R. D., Choate, L. S., & Vaughan, J. (1985). Inhibition of return: Neural basis and function. Cognitive Neuropsychology, 2(3), 211–228.
doi: 10.1080/02643298508252866
Prinz, W. (1997). Perception and action planning. European Journal of Cognitive Psychology, 9(2), 129–154.
doi: 10.1080/713752551
Ramsay, J. O., & Silverman, B. W. (2005). Functional data analysis (2nd ed.). Springer.
doi: 10.1007/b98888
Ratcliff, R., & Rouder, J. N. (1998). Modeling response times for two-choice decisions. Psychological Science, 9(5), 347–356.
doi: 10.1111/1467-9280.00067
Resulaj, A., Kiani, R., Wolpert, D. M., & Shadlen, M. N. (2009). Changes of mind in decision-making. Nature, 461(7261), 263–266.
pubmed: 19693010
pmcid: 2875179
doi: 10.1038/nature08275
Rizzolatti, G., Riggio, L., Dascola, I., & Umiltá, C. (1987). Reorienting attention across the horizontal and vertical meridians: Evidence in favor of a premotor theory of attention. Neuropsychologia, 25(1), 31–40.
pubmed: 3574648
doi: 10.1016/0028-3932(87)90041-8
Schmidt, E. (1989). Zur Theorie der linearen und nichtlinearen Integralgleichungen. In D. Hilbert, E. Schmidt, & A. Pietsch (Eds.), Integralgleichungen und Gleichungen mit unendlich vielen Unbekannten (pp. 190–233). Vieweg+Teubner Verlag. https://doi.org/10.1007/978-3-322-84410-1_3
doi: 10.1007/978-3-322-84410-1_3
Schoemann, M., O’Hora, D., Dale, R., & Scherbaum, S. (2021). Using mouse cursor tracking to investigate online cognition: Preserving methodological ingenuity while moving toward reproducible science. Psychonomic Bulletin & Review, 28(3), 766–787.
doi: 10.3758/s13423-020-01851-3
Schreven, S., Beek, P. J., & Smeets, J. B. (2015). Optimising filtering parameters for a 3D motion analysis system. Journal of Electromyography and Kinesiology, 25(5), 808–814.
pubmed: 26159504
doi: 10.1016/j.jelekin.2015.06.004
Smeets, J. B., & Brenner, E. (1999). A new view on grasping. Motor Control, 3(3), 237–271.
pubmed: 10409797
doi: 10.1123/mcj.3.3.237
Söderkvist, I. (2009). Using SVD for some fitting problems. Retrieved from https://www.ltu.se/cms_fs/1.51590!/svd-fitting.pdf . Accessed 11 Jul 2022.
Song, J.-H., & Nakayama, K. (2009). Hidden cognitive states revealed in choice reaching tasks. Trends in Cognitive Sciences, 13(8), 360–366. https://doi.org/10.1016/j.tics.2009.04.009
doi: 10.1016/j.tics.2009.04.009
pubmed: 19647475
Spivey, M. J., Grosjean, M., & Knoblich, G. (2005). Continuous attraction toward phonological competitors. Proceedings of the National Academy of Sciences, 102(29), 10393–10398.
doi: 10.1073/pnas.0503903102
Sternberg, S. (1969). The discovery of processing stages: Extensions of Donders’ method. Acta Psychologica, 30, 276–315.
doi: 10.1016/0001-6918(69)90055-9
Tipper, S. P., Lortie, C., & Baylis, G. C. (1992). Selective reaching: Evidence for action-centered attention. Journal of Experimental Psychology: Human Perception and Performance, 18(4), 891.
pubmed: 1431753
Tsay, J. S., Kim, H., Haith, A. M., & Ivry, R. B. (2022). Understanding implicit sensorimotor adaptation as a process of proprioceptive re-alignment. Elife, 11, e76639.
pubmed: 35969491
pmcid: 9377801
doi: 10.7554/eLife.76639
Virtanen, P., Gommers, R., Oliphant, T. E., Haberland, M., Reddy, T., Cournapeau, D., ..., & Vázquez-Baeza, Y. (2020). SciPy 1.0: Fundamental algorithms for scientific computing in Python. Nature Methods, 17(3), 261–272. https://doi.org/10.1038/s41592-019-0686-2
Wang, X. M., & Bingham, G. P. (2019). Change in effectivity yields recalibration of affordance geometry to preserve functional dynamics. Experimental Brain Research, 237(3), 817–827.
pubmed: 30610264
doi: 10.1007/s00221-018-05467-x
Wang, X. M., Smith, D., & Zhu, Q. (2023). A webcam-based machine learning approach for the three-dimensional range of motion evaluation. PLoS ONE, 18(10), e0293178. https://doi.org/10.1371/journal.pone.0293178
Wang, X. M., Karlinsky, A., Constable, M. D., Gregory, S. E., & Welsh, T. N. (2024). Social gaze cueing elicits facilitatory and inhibitory effects on movement execution when the model might act on an object. Quarterly Journal of Experimental Psychology 77(2), 230–241. https://doi.org/10.1177/17470218231162546
Welsh, T. N. (2011). The relationship between attentional capture and deviations in movement trajectories in a selective reaching task. Acta Psychologica, 137(3), 300–308.
pubmed: 21507363
doi: 10.1016/j.actpsy.2011.03.011
Welsh, T. N., & Elliott, D. (2004). Movement trajectories in the presence of a distracting stimulus: Evidence for a response activation model of selective reaching. The Quarterly Journal of Experimental Psychology Section A, 57(6), 1031–1057. https://doi.org/10.1080/02724980343000666
doi: 10.1080/02724980343000666
Welsh, T. N., Elliott, D., & Weeks, D. J. (1999). Hand deviations toward distractors Evidence for response competition: Evidence for response competition. Experimental Brain Research, 127, 207–212.
pubmed: 10442412
doi: 10.1007/s002210050790
Whitwell, R. L., & Goodale, M. A. (2013). Grasping without vision: Time normalizing grip aperture profiles yields spurious grip scaling to target size. Neuropsychologia, 51(10), 1878–1887.
pubmed: 23796704
doi: 10.1016/j.neuropsychologia.2013.06.015
Wispinski, N. J., Gallivan, J. P., & Chapman, C. S. (2020). Models, movements, and minds: Bridging the gap between decision making and action. Annals of the New York Academy of Sciences, 1464(1), 30–51.
pubmed: 30312476
doi: 10.1111/nyas.13973
Wolpert, D. M. (1997). Computational approaches to motor control. Trends in Cognitive Sciences, 1(6), 209–216.
pubmed: 21223909
doi: 10.1016/S1364-6613(97)01070-X
Yoxon, E., Constable, M. D., & Welsh, T. N. (2019). Probing the time course of facilitation and inhibition in gaze cueing of attention in an upper-limb reaching task. Attention, Perception, & Psychophysics, 81(7), 2410–2423. https://doi.org/10.3758/s13414-019-01821-5
doi: 10.3758/s13414-019-01821-5