Genomic and clinical characterization of a familial GIST kindred intolerant to imatinib.


Journal

NPJ genomic medicine
ISSN: 2056-7944
Titre abrégé: NPJ Genom Med
Pays: England
ID NLM: 101685193

Informations de publication

Date de publication:
27 Mar 2024
Historique:
received: 08 08 2023
accepted: 13 03 2024
medline: 28 3 2024
pubmed: 28 3 2024
entrez: 28 3 2024
Statut: epublish

Résumé

Familial gastrointestinal stromal tumors (GIST) are rare. We present a kindred with multiple family members affected with multifocal GIST who underwent whole genome sequencing of the germline and tumor. Affected individuals with GIST harbored a germline variant found within exon 13 of the KIT gene (c.1965T>G; p.Asn655Lys, p.N655K) and a variant in the MSR1 gene (c.877 C > T; p.Arg293*, pR293X). Multifocal GISTs in the proband and her mother were treated with preoperative imatinib, which resulted in severe intolerance. The clinical features of multifocal GIST, cutaneous mastocytosis, allergies, and gut motility disorders seen in the affected individuals may represent manifestations of the multifunctional roles of KIT in interstitial cells of Cajal or mast cells and/or may be suggestive of additional molecular pathways which can contribute to tumorigenesis.

Identifiants

pubmed: 38538628
doi: 10.1038/s41525-024-00405-z
pii: 10.1038/s41525-024-00405-z
doi:

Types de publication

Journal Article

Langues

eng

Pagination

24

Informations de copyright

© 2024. The Author(s).

Références

Bachet, J. B. et al. Diagnosis, prognosis and treatment of patients with gastrointestinal stromal tumour (GIST) and germline mutation of KIT exon 13. Eur. J. Cancer 49, 2531–2541, (2013).
doi: 10.1016/j.ejca.2013.04.005 pubmed: 23648119
Carballo, M. et al. Novel c-KIT germline mutation in a family with gastrointestinal stromal tumors and cutaneous hyperpigmentation. Am. J. Med. Genet. A 132A, 361–364 (2005).
doi: 10.1002/ajmg.a.30388 pubmed: 15742474
Ricci, R. Syndromic gastrointestinal stromal tumors. Hered. Cancer Clin. Pract. 14, 15 (2016).
doi: 10.1186/s13053-016-0055-4 pubmed: 27437068 pmcid: 4950812
Postow, M. A. & Robson, M. E. Inherited gastrointestinal stromal tumor syndromes: mutations, clinical features, and therapeutic implications. Clin. Sarcoma Res. 2, 16 (2012).
doi: 10.1186/2045-3329-2-16 pubmed: 23036227 pmcid: 3496697
Li, F. P. et al. Familial gastrointestinal stromal tumor syndrome: phenotypic and molecular features in a kindred. J. Clin. Oncol. 23, 2735–2743, (2005).
doi: 10.1200/JCO.2005.06.009 pubmed: 15837988
Niinuma, T., Suzuki, H. & Sugai, T. Molecular characterization and pathogenesis of gastrointestinal stromal tumor. Transl. Gastroenterol. Hepatol. 3, 2 (2018).
doi: 10.21037/tgh.2018.01.02 pubmed: 29441367 pmcid: 5803009
Poveda, A. et al. GEIS guidelines for gastrointestinal sarcomas (GIST). Cancer Treat. Rev. 55, 107–119 (2017).
doi: 10.1016/j.ctrv.2016.11.011 pubmed: 28351781
Ke, H. et al. Germline mutations of KIT in gastrointestinal stromal tumor (GIST) and mastocytosis. Cell Biosci. 6, 55 (2016).
doi: 10.1186/s13578-016-0120-8 pubmed: 27777718 pmcid: 5070372
Richards, K. A. et al. A novel KIT mutation results in piebaldism with progressive depigmentation. J. Am. Acad. Dermatol 44, 288–292, (2001).
doi: 10.1067/mjd.2001.112221 pubmed: 11174389
Hemming, M. L. et al. Translational insights into gastrointestinal stromal tumor and current clinical advances. Ann. Oncol. 29, 2037–2045 (2018).
doi: 10.1093/annonc/mdy309 pubmed: 30101284
Kinoshita, K. et al. Characterization of tyrosine kinase I domain c-kit gene mutation Asn655Lys newly found in primary jejunal gastrointestinal stromal tumor. Am. J. Gastroenterol. 102, 1134–1136, (2007).
doi: 10.1111/j.1572-0241.2007.01180_11.x pubmed: 17489795
Yun, J. et al. KIT amplification and gene mutations in acral/mucosal melanoma in Korea. APMIS 119, 330–5, (2011).
doi: 10.1111/j.1600-0463.2011.02737.x pubmed: 21569090
Oberg JAGB, J. L. et al. Implementation of next generation sequencing into pediatric hematology- oncology practice: moving beyond actionable alterations. Genome Med. 8, 133 (2016).
doi: 10.1186/s13073-016-0389-6
Biasco, G. et al. Gastrointestinal stromal tumors: report of an audit and review of the literature. Eur. J. Cancer Prev. 18, 106–116 (2009).
doi: 10.1097/CEJ.0b013e32830c8da8 pubmed: 19337057
Akin, C. & Metcalfe, D. D. The biology of Kit in disease and the application of pharmacogenetics. J. Allergy Clin. Immunol. 114, 13–19 (2004).
doi: 10.1016/j.jaci.2004.04.046 pubmed: 15241338
Gramza, A. W., Corless, C. L. & Heinrich, M. C. Resistance to tyrosine kinase inhibitors in gastrointestinal stromal tumors. Clin. Cancer Res. 15, 7510–7518 (2009).
doi: 10.1158/1078-0432.CCR-09-0190 pubmed: 20008851
Heinrich, M. C. et al. Kinase mutations and imatinib response in patients with metastatic gastrointestinal stromal tumor. J. Clin. Oncol. 21, 4342–4349 (2003).
doi: 10.1200/JCO.2003.04.190 pubmed: 14645423
Schaefer, I. M., DeMatteo, R. P. & Serrano, C. The GIST of advances in treatment of advanced gastrointestinal stromal tumor. Am. Soc. Clin. Oncol. Educ. Book 42, 1–15 (2022).
pubmed: 35522913 pmcid: 9113521
Graham, J. et al. Imatinib in the management of multiple gastrointestinal stromal tumors associated with a germline KIT K642E mutation. Arch. Pathol. Lab. Med. 131, 1393–1396 (2007).
doi: 10.5858/2007-131-1393-IITMOM pubmed: 17824795
Engin, G. et al. Imatinib response of gastrointestinal stromal tumor patients with germline mutation on KIT exon 13: a family report. World J. Radiol. 9, 365–370 (2017).
doi: 10.4329/wjr.v9.i9.365 pubmed: 29098070 pmcid: 5658632
Liegl, B. et al. Heterogeneity of kinase inhibitor resistance mechanisms in GIST. J. Pathol. 216, 64–74 (2008).
doi: 10.1002/path.2382 pubmed: 18623623 pmcid: 2693040
Jung, S. et al. Clinical and genomic correlates of imatinib response in melanomas with KIT alterations. Br. J. Cancer 127, 1726–1732 (2022).
doi: 10.1038/s41416-022-01942-z pubmed: 35999272 pmcid: 9596433
Cortes, J. E. et al. Minimal cross-intolerance with nilotinib in patients with chronic myeloid leukemia in chronic or accelerated phase who are intolerant to imatinib. Blood 117, 5600–5606 (2011).
doi: 10.1182/blood-2010-11-318949 pubmed: 21467546 pmcid: 4186645
Orloff, M. et al. Germline mutations in MSR1, ASCC1, and CTHRC1 in patients with Barrett esophagus and esophageal adenocarcinoma. J. Am. Med. Assoc. 306, 410–419 (2011).
doi: 10.1001/jama.2011.1029
Yu, X. et al. Scavenger receptors: emerging roles in cancer biology and immunology. Adv. Cancer Res. 128, 309–364 (2015).
doi: 10.1016/bs.acr.2015.04.004 pubmed: 26216637 pmcid: 4631385
Seppala, E. H. et al. Germ-line alterations in MSR1 gene and prostate cancer risk. Clin. Cancer Res. 9, 5252–5256 (2003).
pubmed: 14614006
Maier, C. et al. Germline mutations of the MSR1 gene in prostate cancer families from Germany. Hum. Mutat. 27, 98–102 (2006).
doi: 10.1002/humu.20271 pubmed: 16287155
Xu, J. et al. Germline mutations and sequence variants of the macrophage scavenger receptor 1 gene are associated with prostate cancer risk. Nat. Genet. 32, 321–325 (2002).
doi: 10.1038/ng994 pubmed: 12244320
Liu, Z. X. et al. Whole-exome sequencing among chinese patients with hereditary diffuse gastric cancer. JAMA Netw. Open 5, e2245836 (2022).
doi: 10.1001/jamanetworkopen.2022.45836 pubmed: 36484990 pmcid: 9856492
Chen, X. et al. MSR1 characterized by chromatin accessibility mediates M2 macrophage polarization to promote gastric cancer progression. Int. Immunopharmacol. 112, 109217 (2022).
doi: 10.1016/j.intimp.2022.109217 pubmed: 36095948
Gudgeon, J., Marin-Rubio, J. L. & Trost, M. The role of macrophage scavenger receptor 1 (MSR1) in inflammatory disorders and cancer. Front. Immunol. 13, 1012002 (2022).
doi: 10.3389/fimmu.2022.1012002 pubmed: 36325338 pmcid: 9618966
Gough, P. J., Greaves, D. R. & Gordon, S. A naturally occurring isoform of the human macrophage scavenger receptor (SR-A) gene generated by alternative splicing blocks modified LDL uptake. J. Lipid Res. 39, 531–543 (1998).
doi: 10.1016/S0022-2275(20)33292-2 pubmed: 9548586
Appel, S. et al. Effects of imatinib on monocyte-derived dendritic cells are mediated by inhibition of nuclear factor-kappaB and Akt signaling pathways. Clin. Cancer Res. 11, 1928–1940 (2005).
doi: 10.1158/1078-0432.CCR-04-1713 pubmed: 15756019
Chen, Y. et al. A tumor suppressor function of the Msr1 gene in leukemia stem cells of chronic myeloid leukemia. Blood 118, 390–400 (2011).
doi: 10.1182/blood-2010-11-316760 pubmed: 21596859 pmcid: 3138690
Anderson, N. D. et al. Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors. Science 361, eaam8419 (2018).
doi: 10.1126/science.aam8419 pubmed: 30166462 pmcid: 6176908

Auteurs

K M Ingley (KM)

Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, Toronto, Canada.
Department of Pediatrics, Division of Haematology/ Oncology, The Hospital for Sick Children, Toronto, ON, Canada.
Department of Oncology, Royal Children's Hospital, Melbourne and Victorian Adolescent & Young Adult Cancer Service, Peter MacCallum Cancer Centre, Melbourne, Australia.

M Zatzman (M)

Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada.
Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.

A M Fontebasso (AM)

Division of General Surgery, Sinai Health System, Department of Surgery, University of Toronto, Toronto, ON, Canada.
Department of Surgical Oncology, Princess Margaret Cancer Centre, Toronto, ON, Canada.

W Lo (W)

Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada.

V Subasri (V)

Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.

A Goldenberg (A)

Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Department of Computer Science, University of Toronto, Toronto, ON, Canada.

Y Li (Y)

Department of Pediatric and Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, Canada.

S Davidson (S)

Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Department of Pediatric and Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, Canada.

N Kanwar (N)

Department of Pediatric and Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, Canada.

L Waldman (L)

Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Department of Genetic Counselling, The Hospital for Sick Children, Toronto, ON, Canada.

L Brunga (L)

Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.

Y Babichev (Y)

Division of General Surgery, Sinai Health System, Department of Surgery, University of Toronto, Toronto, ON, Canada.
Department of Surgical Oncology, Princess Margaret Cancer Centre, Toronto, ON, Canada.

E G Demicco (EG)

Department of Pathology and Laboratory Medicine, Sinai Health System, University of Toronto, Toronto, ON, Canada.

A Gupta (A)

Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, Toronto, Canada.
Department of Pediatrics, Division of Haematology/ Oncology, The Hospital for Sick Children, Toronto, ON, Canada.

M Szybowska (M)

Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, Fred A. Litwin Centre in Genetic Medicine, University Health Network, Toronto, ON, Canada.

S Thipphavong (S)

Department of Radiology, Sinai Health System, University of Toronto, Toronto, ON, Canada.

D Malkin (D)

Department of Pediatrics, Division of Haematology/ Oncology, The Hospital for Sick Children, Toronto, ON, Canada.

A Villani (A)

Department of Pediatrics, Division of Haematology/ Oncology, The Hospital for Sick Children, Toronto, ON, Canada.

A Shlien (A)

Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Department of Pediatric and Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, Canada.

R A Gladdy (RA)

Division of General Surgery, Sinai Health System, Department of Surgery, University of Toronto, Toronto, ON, Canada. rebecca.gladdy@sinaihealth.ca.
Department of Surgical Oncology, Princess Margaret Cancer Centre, Toronto, ON, Canada. rebecca.gladdy@sinaihealth.ca.

R H Kim (RH)

Division of Medical Oncology and Hematology, Princess Margaret Cancer Centre, Fred A. Litwin Centre in Genetic Medicine, University Health Network, Toronto, ON, Canada. Raymond.kim@uhn.ca.
Department of Medicine, University of Toronto, Toronto, ON, Canada. Raymond.kim@uhn.ca.

Classifications MeSH