Integrated QSAR Models for Prediction of Serotonergic Activity: Machine Learning Unveiling Activity and Selectivity Patterns of Molecular Descriptors.
Mordred
machine learning
molecular descriptors
selectivity and activity
serotonin receptors
statistical analysis
Journal
Pharmaceutics
ISSN: 1999-4923
Titre abrégé: Pharmaceutics
Pays: Switzerland
ID NLM: 101534003
Informations de publication
Date de publication:
01 Mar 2024
01 Mar 2024
Historique:
received:
08
02
2024
revised:
27
02
2024
accepted:
28
02
2024
medline:
28
3
2024
pubmed:
28
3
2024
entrez:
28
3
2024
Statut:
epublish
Résumé
Understanding the features of compounds that determine their high serotonergic activity and selectivity for specific receptor subtypes represents a pivotal challenge in drug discovery, directly impacting the ability to minimize adverse events while maximizing therapeutic efficacy. Up to now, this process has been a puzzle and limited to a few serotonergic targets. One approach represented in the literature focuses on receptor structure whereas in this study, we followed another strategy by creating AI-based models capable of predicting serotonergic activity and selectivity based on ligands' representation by molecular descriptors. Predictive models were developed using Automated Machine Learning provided by Mljar and later analyzed through the SHAP importance analysis, which allowed us to clarify the relationship between descriptors and the effect on activity and what features determine selective affinity for serotonin receptors. Through the experiments, it was possible to highlight the most important features of ligands based on highly efficient models. These features are discussed in this manuscript. The models are available in the additional modules of the SerotoninAI application called "Serotonergic activity" and "Selectivity".
Identifiants
pubmed: 38543243
pii: pharmaceutics16030349
doi: 10.3390/pharmaceutics16030349
pii:
doi:
Types de publication
Journal Article
Langues
eng
Subventions
Organisme : Smart Growth Operational Programme POIR 4.2
ID : POIR.04.02.00-00-D023/20
Organisme : "Excellence Initiative-Research University" at Jagiellonian University
ID : qLIFE Priority Research Area
Organisme : Jagiellonian University
ID : N42/DBS/000261