Epidemiological and clinical insights into the enterovirus D68 upsurge in Europe 2021/22 and the emergence of novel B3-derived lineages, ENPEN multicentre study.

B3-derived lineages European Non-Polio Enterovirus Network (ENPEN) acute flaccid myelitis (AFM) acute flaccid paralysis (AFP) coronavirus disease caused by SARS-CoV-2 (COVID-19) enterovirus D68 (EV-D68) non-polio enterovirus (NPEV) respiratory infection surveillance

Journal

The Journal of infectious diseases
ISSN: 1537-6613
Titre abrégé: J Infect Dis
Pays: United States
ID NLM: 0413675

Informations de publication

Date de publication:
28 Mar 2024
Historique:
received: 07 06 2023
revised: 14 11 2023
accepted: 08 03 2024
medline: 28 3 2024
pubmed: 28 3 2024
entrez: 28 3 2024
Statut: aheadofprint

Résumé

Enterovirus D68 (EV-D68) infections are associated with severe respiratory disease and acute flaccid myelitis (AFM). The European Non-Polio Enterovirus Network (ENPEN) aimed to investigate the epidemiological and genetic characteristics of EV-D68 and its clinical impact during the fall-winter season of 2021/22. From 19 European countries, 58 institutes reported 10,481 (6.8%) EV-positive samples of which 1,004 (9.6%) were identified as EV-D68 (852 respiratory samples). Clinical data was reported for 969 cases. 78.9% of infections were reported in children (0-5 years); 37.9% of cases were hospitalised. Acute respiratory distress was commonly noted (93.1%) followed by fever (49.4%). Neurological problems were observed in 6.4% of cases with six reported with AFM. Phylodynamic/Nextstrain and phylogenetic analyses based on 694 sequences showed the emergence of two novel B3-derived lineages, with no regional clustering. In conclusion, we describe a large-scale EV-D68 European upsurge with severe clinical impact and the emergence of B3-derived lineages.

Identifiants

pubmed: 38547499
pii: 7637136
doi: 10.1093/infdis/jiae154
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© The Author(s) 2024. Published by Oxford University Press on behalf of Infectious Diseases Society of America.

Auteurs

Margarida Pires Simoes (MP)

Centre for infectious Disease Control (Cib), Dutch National Public Health Insitute (RIVM), Bilthoven, the Netherlands.
European Program for Public Health Microbiology Training (EUPHEM), European Centre for Disease Prevention and Control, (ECDC), Stockholm, Sweden.

Emma B Hodcroft (EB)

Geneva Center of Emerging Viral Diseases, HUG, and University of Geneva, Geneva, Switzerland.
Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland.

Peter Simmonds (P)

Nuttfield Department for Medicine, University of Oxford, Oxford, United Kingdom.

Jan Albert (J)

Department of Clinical Microbiology, Karolinska University Hospital, Stockholm, Sweden.
Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.

Enagon K Alidjinou (EK)

University of Lille, CHU Lille, Laboratoire de Virologie EA3610, France.

Katia Ambert-Balay (K)

National Reference Centre for gastroenteritis viruses. Laboratory of Virology-Serology, University Hospital of Dijon Bourgogne, Dijon, France.

Cristina Andrés (C)

Respiratory Virus Unit, Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain.

Andrés Antón (A)

Respiratory Virus Unit, Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain.

Christelle Auvray (C)

National Reference Centre for gastroenteritis viruses. Laboratory of Virology-Serology, University Hospital of Dijon Bourgogne, Dijon, France.

Jean-Luc Bailly (JL)

Université Clermont Auvergne, CNRS, LMGE-EPIE team, Clermont-Ferrand, France.

Fausto Baldanti (F)

Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.
Department of Clinical Surgical Diagnostic and Pediatric Sciences, Università degli Studi di Pavia, Pavia, Italy.

Capser Bastings (C)

PAMM, Veldhoven, the Netherlands.

Stuart Beard (S)

Enteric Virus Unit, UK Health Security Agency, Colindale, United Kingdom.

Carla Berengua Pereira (CB)

Microbiology Department Hospital Universitari de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Barcelona, Spain.

Natasa Berginc (N)

National Laboratory of Health, Environment and Food, Laboratory for Public Health Virology, Ljubljana, Slovenia.

Mandy Bloemen (M)

Clinical and Epidemiological Virology, Rega Institute KU Leuven, Leuven, Belgium.

Soile Blomqvist (S)

National Institute for Health and Welfare, Helsinki, Finland.

Froukje Bosma (F)

Laboratory for Medical Microbiology and Public Health, Hengelo, the Netherlands.

Sindy Böttcher (S)

National Reference Laboratory for Poliomyelitis and Enteroviruses, Robert-Koch Institute, Berlin, Germany.

Laura Bubba (L)

European Non-Polio Enterovirus Network.

Stafan Buderus (S)

GFO Kliniken Bonn Betriebsstätte St Marien, Bonn, Germany. Robert-Koch-Straße 1, D-53115 Bonn (Venusberg).

Maria Cabrerizo (M)

National Centre for Microbiology, Instituto de Salud Carlos III, Enterovirus and Viral Gastroenteritis Unit/Polio National Lab, Madrid, Spain. CIBERESP.

Christina Calvo (C)

Pediatric and Infectious Diseases Department. Hospital Universtiario La Paz, Fundación IdiPaz, CIBERINFEC ISCIII, Madrid, Spain.

Christina Celma (C)

Enteric Virus Unit, UK Health Security Agency, Colindale, United Kingdom.

Ferruccio Ceriotti (F)

Virology Unit, Division of Clinical Laboratory, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.

Gemma Clark (G)

Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, NG7 2UH, United Kingdom.

Inës Costa (I)

National Reference Laboratory for Influenza and Other Respiratory Viruses, National Institute of Health Dr Ricardo Jorge (INSA), Lisbon, Portugal.

Marianne Coste-Burel (M)

Virology Department, CHU Hôtel Dieu, University Hospital, Nantes, France.

Karen Couderé (K)

ElisabethTweesteden Hospital, Tilburg, the Netherlands.

Jeroen Cremer (J)

Centre for infectious Disease Control (Cib), Dutch National Public Health Insitute (RIVM), Bilthoven, the Netherlands.

Margarita Del Cuerpo Casas (M)

Microbiology Department Hospital Universitari de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Barcelona, Spain.

Theo Daehne (T)

Institute of Virology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.

Jessica de Beer (J)

Laboratory for Medical Microbiology and Public Health, Hengelo, the Netherlands.

Maria de Ceano-Vivas (M)

Pediatric and Infectious Diseases Department. Hospital Universtiario La Paz, Fundación IdiPaz, CIBERINFEC ISCIII, Madrid, Spain.

Cillian De Gascun (C)

National Virus Reference Laboratory, University College Dublin, Dublin, Ireland.

Alexis de Rougemont (A)

National Reference Centre for gastroenteritis viruses. Laboratory of Virology-Serology, University Hospital of Dijon Bourgogne, Dijon, France.

Johnathan Dean (J)

National Virus Reference Laboratory, University College Dublin, Dublin, Ireland.

Jennifer L Dembinski (JL)

Department of Virology, Norwegian Institute of Public Health, Norway.

Sabine Diedrich (S)

National Reference Laboratory for Poliomyelitis and Enteroviruses, Robert-Koch Institute, Berlin, Germany.

Javier Diez-Domingo (J)

Center for Public Health Research (FISABIO-Public Health), Generalitat Valenciana, Valencia, Spain.

Lena Dillner (L)

The Public Health Agency of Sweden, Solna, Sweden.

Dagny H Dorenberg (DH)

Department of Virology, Norwegian Institute of Public Health, Norway.

Alexandra Ducancelle (A)

Laboratoire de Virologie, Département de Biologie des Agents Infectieux, CHU Angers, Angers, France.

Susanne Dudman (S)

Oslo University Hospital, Oslo, Norway.
University of Oslo, Oslo, Norway.

Robert Dyrdak (R)

Department of Clinical Microbiology, Karolinska University Hospital, Stockholm, Sweden.
Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, Sweden.

Anna-Maria Eis-Huebinger (AM)

Institut für Virologie Universitätsklinikum Bonn, Bonn, Germany.

Iker Falces-Romero (I)

Microbiology Department, Hospital Unviersitario La Paz, CIBERINFEC ISCIII, Madrid, Spain.

Agnes Farkas (A)

National Public Health Center, Budapest, Hungary.

Susan Feeney (S)

Regional Virus Laboratory, Belfast Health and Social Care Trust (BHSCT), Royal Victoria Hospital, Belfast, United Kingdom.

Maria D Fernandez-Garcia (MD)

National Centre for Microbiology, Instituto de Salud Carlos III, Ctra. Majadahonda-Pozuelo, Km 2, 28220 Majadahonda, Madrid, Spain.

Jacky Flipse (J)

Laboratory for Medical Microbiology and Immunology, Rijnstate, Velp, the Netherlands.

Kristina T Franck (KT)

The Danish WHO National Reference Laboratory for Poliovirus, Statens Serum Institut, Copenhagen, Denmark.

Cristina Galli (C)

Department of Biomedical Sciences for Health, University of Milan, Milano (MI), Italy.

Isabelle Garrigue (I)

Universitary Hospital of Bordeaux, France.

Felix Geeraedts (F)

Laboratory for Medical Microbiology and Public Health, Hengelo, the Netherlands.

Irina Georgieva (I)

National Reference Laboratory for Enteroviruses, National Center of Infectious and Parasitic Diseases, Sofia, Bulgaria.

Federica Giardina (F)

Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.

Raquel Guiomar (R)

National Reference Laboratory for Influenza and Other Respiratory Viruses, National Institute of Health Dr Ricardo Jorge (INSA), Lisbon, Portugal.

Elenor Hauzenberger (E)

The Public Health Agency of Sweden, Solna, Sweden.

Esther Heikens (E)

St Jansdal Hospital, the Netherlands.

Cécille Henquell (C)

CHU Clermont-Ferrand, National Reference Centre for enteroviruses and parechoviruses - Associated laboratory, Clermont-Ferrand, France.

Didier Hober (D)

University of Lille, CHU Lille, Laboratoire de Virologie EA3610, France.

Amrio Hönemann (A)

Institute of Medical Microbiology and Virology, University of Leipzig, Leipzig, Germany.

Hannah Howson-Wells (H)

Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, NG7 2UH, United Kingdom.

Željka Hruškar (Ž)

Department of Virology, Croatian Institute of Public Health, Zagreb, Croatia.

Niina Ikonen (N)

National Institute for Health and Welfare, Helsinki, Finland.

Berthemarie Imbert (B)

Virology Department, CHU Hôtel Dieu, University Hospital, Nantes, France.

Arjan R Jansz (AR)

PAMM, Veldhoven, the Netherlands.

Marion Jeannoël (M)

National Reference Center for Enteroviruses and Parechoviruses, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.

Helena Jiřincová (H)

National Reference Laboratory for Enteroviruses, National Institute of Public Health, Prague, Czech Republic.

Laurence Josset (L)

National Reference Center for Enteroviruses and Parechoviruses, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.

Kathrin Keeren (K)

Secretary of the commission for Polio Eradication in Germany, Robert-Koch Institute, Berlin, Germany.

Naomie Kramer-Lindhout (N)

Admiraal de Ruijter Hospital, Goes, the Netherlands.

Sidsel Krokstad (S)

Department of Medical Microbiology, St. Olavs Hospital, Trondheim University Hospital, Norway.

Mouna Lazrek (M)

University of Lille, CHU Lille, Laboratoire de Virologie EA3610, France.

Hélène Le Guillou-Guillemette (H)

Laboratoire de Virologie, Département de Biologie des Agents Infectieux, CHU Angers, Angers, France.

Caroline Lefeuvre (C)

Laboratoire de Virologie, Département de Biologie des Agents Infectieux, CHU Angers, Angers, France.

Andreas Lind (A)

Oslo University Hospital, Oslo, Norway.

Maja M Lunar (MM)

Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Slovenia.

Melanie Maier (M)

Institute of Medical Microbiology and Virology, University of Leipzig, Leipzig, Germany.

Stéphanie Marque-Juillet (S)

Service de Biologie, Centre Hospitalier de Versailles, 78157 Le Chesnay, France.

C Patrick McClure (CP)

Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, NG7 2UH, United Kingdom.
Wolfson Centre for Global Virus Research, School of Life Sciences, University of Nottingham, Nottingham, United Kigndom.

James McKenna (J)

Regional Virus Laboratory, Belfast Health and Social Care Trust (BHSCT), Royal Victoria Hospital, Belfast, United Kingdom.

Adam Meijer (A)

Centre for infectious Disease Control (Cib), Dutch National Public Health Insitute (RIVM), Bilthoven, the Netherlands.

Ana Menasalvas Ruiz (A)

Pediatric Infectious Diseases Unit. Hospital Universitario Virgen de la Arrixaca, Carretera Murcia-Cartagena s/n 30120 El Palmar; Murcia, Spain.

Beatriz Mengual-Chuliá (B)

Center for Public Health Research (FISABIO-Public Health), Generalitat Valenciana, Valencia, Spain.

Sofie Midgley (S)

The Danish WHO National Reference Laboratory for Poliovirus, Statens Serum Institut, Copenhagen, Denmark.

Audrey Mirand (A)

Université Clermont Auvergne, CNRS, LMGE-EPIE team, Clermont-Ferrand, France.
CHU Clermont-Ferrand, National Reference Centre for enteroviruses and parechoviruses - Associated laboratory, Clermont-Ferrand, France.

Richard Molenkamp (R)

Erasmus Medical Center, Rotterdam, the Netherlands.

Milagrosa Montes (M)

Microbiology Department, Donostia University Hospital and Biodonostia Health Research Institute, San Sebastián, Spain.

Antonio Moreno-Docón (A)

Microbiology Department.Hospital Clínico Universitario Virgen de la Arrixaca. IMIB-Arrixaca, Murcia University, Murcia, Spain.

Ursula Morley (U)

National Virus Reference Laboratory, University College Dublin, Dublin, Ireland.

Jean-Luc Murk (JL)

ElisabethTweesteden Hospital, Tilburg, the Netherlands.

Ana Navascués-Ortega (A)

Microbiology Department, Hospital Universitario de Navarra, Spain.

Roel Nijhuis (R)

Meander Medical Center, Amersfoort, the Netherlands.

Lubomira Nikolaeva-Glomb (L)

National Reference Laboratory for Enteroviruses, National Center of Infectious and Parasitic Diseases, Sofia, Bulgaria.

Svein A Nordbø (SA)

Norwegian University of Science and Technology, Trondheim, Norway.

Sanela Numanovic (S)

Department of Virology, Norwegian Institute of Public Health, Norway.

Massimo Oggioni (M)

Microbiology and Virology Unit, Department of diagnostic services, ASST-Brianza, Vimercate, Italy.

Eider Oñate Vergara (E)

Microbiology Department, Donostia University Hospital and Biodonostia Health Research Institute, San Sebastián, Spain.

Jordi Pacaud (J)

Universitary Hospital of Bordeaux, France.

Marie L Pacreau (ML)

Service de Biologie, Centre Hospitalier de Versailles, 78157 Le Chesnay, France.

Marcus Panning (M)

Institute of Virology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany.

Elena Pariani (E)

Department of Biomedical Sciences for Health, University of Milan, Milano (MI), Italy.

Lili Pekova (L)

Clinic of Infectious Diseases, University Hospital "Prof. Dr. Stoyan Kirkovich" AD - Stara Zagora, Bulgaria.

Laura Pellegrinelli (L)

Department of Biomedical Sciences for Health, University of Milan, Milano (MI), Italy.

Miroslav Petrovec (M)

Institute of Microbiology and Immunology, Laboratory for the Diagnosis of Viral Infections, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.

Corinna Pietsch (C)

Institute of Medical Microbiology and Virology, University of Leipzig, Leipzig, Germany.

Léa Pilorge (L)

Département de Microbiologie (Pr Payan), Laboratoire de Virologie, CHRU de Brest, France.

Luis Piñeiro (L)

Microbiology Department, Donostia University Hospital and Biodonostia Health Research Institute, San Sebastián, Spain.

Antonio Piralla (A)

Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.

Mario Poljak (M)

Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Slovenia.

Birgit Prochazka (B)

NRCP Vienna at AGES - Austrian Agency for Health and Food Safety, Institute of Medical Microbiology and Hygiene, Vienna, Austria.

Nuria Rabella (N)

Microbiology Department Hospital Universitari de la Santa Creu i Sant Pau, Universitat Autònoma de Barcelona, Barcelona, Spain.

Janette C Rahamat-Langendoen (JC)

Erasmus Medical Center, Rotterdam, the Netherlands.

Petra Rainetova (P)

National Reference Laboratory for Enteroviruses, National Institute of Public Health, Prague, Czech Republic.

Marijke Reynders (M)

Laboratory Medicine, Molecular Microbiology, AZ St.Jan Brugge-Oostende AV, Bruges, Belgium.

Annelies Riezebos-Brilman (A)

Laboratory for Medical Microbiology and Public Health, Hengelo, the Netherlands.

Lieuwe Roorda (L)

Maasstad Hospital, Rotterdam, the Netherlands.

Carita Savolainen-Kopra (C)

National Institute for Health and Welfare, Helsinki, Finland.

Isabelle Schuffenecker (I)

National Reference Center for Enteroviruses and Parechoviruses, Institut des Agents Infectieux, Hospices Civils de Lyon, Lyon, France.

Leo C Smeets (LC)

Reinier Haga Medical Diagnostic Center, Delft, the Netherlands.

Ayse Stoyanova (A)

National Reference Laboratory for Enteroviruses, National Center of Infectious and Parasitic Diseases, Sofia, Bulgaria.

Karl Stefic (K)

INSERM U1259, Université de Tours, Tours, France - Laboratoire de Virologie, Centre Hospitalier Régional Universitaire de Tours, Tours, France.

Caroline Swanink (C)

Laboratory for Medical Microbiology and Immunology, Rijnstate, Velp, the Netherlands.

Irena Tabain (I)

Department of Virology, Croatian Institute of Public Health, Zagreb, Croatia.

Jeroen Tjhie (J)

PAMM, Veldhoven, the Netherlands.
ElisabethTweesteden Hospital, Tilburg, the Netherlands.

Luc Thouault (L)

Département de Microbiologie (Pr Payan), Laboratoire de Virologie, CHRU de Brest, France.

Camille Tumiotto (C)

Universitary Hospital of Bordeaux, France.

Sara Uceda Renteria (S)

Virology Unit, Division of Clinical Laboratory, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.

Tina Uršič (T)

Institute of Microbiology and Immunology, Laboratory for the Diagnosis of Viral Infections, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.

Sophie Vallet (S)

Département de Microbiologie (Pr Payan), Laboratoire de Virologie, CHRU de Brest, France.

Marc Van Ranst (M)

Clinical and Epidemiological Virology, Rega Institute KU Leuven, Leuven, Belgium.

Peter Van Wunnik (P)

Reinier Haga Medical Diagnostic Center, Delft, the Netherlands.

Jaco J Verweij (JJ)

ElisabethTweesteden Hospital, Tilburg, the Netherlands.

Jorgina Vila (J)

Respiratory Virus Unit, Microbiology Department, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain.

Bas Wintermans (B)

Admiraal de Ruijter Hospital, Goes, the Netherlands.

Elke Wollants (E)

Clinical and Epidemiological Virology, Rega Institute KU Leuven, Leuven, Belgium.

Katja C Wolthers (KC)

Amsterdam University Medical Centers, location AMC, Amsterdam, the Netherlands.

F Xavier López-Labrado (F)

Center for Public Health Research (FISABIO-Public Health), Generalitat Valenciana, Valencia, Spain.

Thea Kolsen Fischer (TK)

Department of Clinical Research, Nordsjællands Hospital, Hilleroed, Denmark.
Department of Public Health, University of Copenhagen, Copenhagen, Denmark.

Heli Harvala (H)

Nuffield Division of Clinical Laboratory Sciences, Radcliffe Department of Medicine, Oxford, United Kingdom.
NHS Blood and Transplant, Microbiology Services, Colindale, United Kingdom.

Kimberley S M Benschop (KSM)

Centre for infectious Disease Control (Cib), Dutch National Public Health Insitute (RIVM), Bilthoven, the Netherlands.

Classifications MeSH