Possible incomplete penetrance of Xq28 int22h-1/int22h-2 duplication.
CLIC2
RAB39B
Xq28 duplication
Xq28 int22h‐1/int22h‐2 duplication
X‐linked intellectual disability
incomplete penetrance
Journal
Clinical genetics
ISSN: 1399-0004
Titre abrégé: Clin Genet
Pays: Denmark
ID NLM: 0253664
Informations de publication
Date de publication:
01 Apr 2024
01 Apr 2024
Historique:
revised:
16
03
2024
received:
03
12
2023
accepted:
18
03
2024
medline:
2
4
2024
pubmed:
2
4
2024
entrez:
1
4
2024
Statut:
aheadofprint
Résumé
Xq28 int22h-1/int22h-2 duplication is the result of non-allelic homologous recombination between int22h-1/int22h-2 repeats separated by 0.5 Mb. It is responsible for a syndromic form of intellectual disability (ID), with recurrent infections and atopic diseases. Minor defects, nonspecific facial dysmorphic features, and overweight have also been described. Half of female carriers have been reported with ID, whereas all reported evaluated born males present mild to moderate ID, suggesting complete penetrance. We collected data on 15 families from eight university hospitals. Among them, 40 patients, 21 females (one fetus), and 19 males (two fetuses), were carriers of typical or atypical Xq28 int22h-1/int22h-2 duplication. Twenty-one individuals were considered asymptomatic (16 females and 5 males), without significantly higher rate of recurrent infections, atopia, overweight, or facial dysmorphism. Approximately 67% live-born males and 23% live-born female carriers of the typical duplication did not have obvious signs of intellectual disability, suggesting previously undescribed incomplete penetrance or low expression in certain carriers. The possibility of a second-hit or modifying factors to this possible susceptibility locus is yet to be studied but a possible observational bias should be considered in assessing such challenging X-chromosome copy number gains. Additional segregation studies should help to quantify this newly described incomplete penetrance.
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Informations de copyright
© 2024 The Authors. Clinical Genetics published by John Wiley & Sons Ltd.
Références
Ropers HH, Hamel BCJ. X‐linked mental retardation. Nat Rev Genet. 2005;6(1):46‐57.
Chiurazzi P, Schwartz CE, Gecz J, Neri G. XLMR genes: update 2007. Eur J Hum Genet. 2008;16(4):422‐434.
Neri G, Schwartz CE, Lubs HA, Stevenson RE. X‐linked intellectual disability update 2017. Am J Med Genet A. 2018;176(6):1375‐1388.
Whibley AC, Plagnol V, Tarpey PS, et al. Fine‐scale survey of X chromosome copy number variants and indels underlying intellectual disability. Am J Hum Genet. 2010;87(2):173‐188.
Sanlaville D, Schluth‐Bolard C, Turleau C. Distal Xq duplication and functional Xq disomy. Orphanet J Rare Dis. 2009;20(4):4.
Sanlaville D, Prieur M, de Blois MC, et al. Functional disomy of the Xq28 chromosome region. Eur J Hum Genet. 2005;13(5):579‐585.
Bauters M, Van Esch H, Friez MJ, et al. Nonrecurrent MECP2 duplications mediated by genomic architecture‐driven DNA breaks and break‐induced replication repair. Genome Res. 2008;18(6):847‐858.
del Gaudio D, Fang P, Scaglia F, et al. Increased MECP2 gene copy number as the result of genomic duplication in neurodevelopmentally delayed males. Genet Med. 2006;8(12):784‐792.
Liu P, Carvalho CMB, Hastings PJ, Lupski JR. Mechanisms for recurrent and complex human genomic rearrangements. Curr Opin Genet Dev. 2012;22(3):211‐220.
Watson CT, Marques‐Bonet T, Sharp AJ, Mefford HC. The genetics of microdeletion and microduplication syndromes: an update. Annu Rev Genomics Hum Genet. 2014;15:215‐244.
Lubs H, Abidi F, Bier JA, et al. XLMR syndrome characterized by multiple respiratory infections, hypertelorism, severe CNS deterioration and early death localizes to distal Xq28. Am J Med Genet. 1999;85(3):243‐248.
Van Esch H, Bauters M, Ignatius J, et al. Duplication of the MECP2 region is a frequent cause of severe mental retardation and progressive neurological symptoms in males. Am J Hum Genet. 2005;77(3):442‐453.
El‐Hattab AW, Fang P, Jin W, et al. Int22h‐1/int22h‐2‐mediated Xq28 rearrangements: intellectual disability associated with duplications and in utero male lethality with deletions. J Med Genet. 2011;48(12):840‐850.
El‐Hattab AW, Schaaf CP, Fang P, et al. Clinical characterization of int22h1/int22h2‐mediated Xq28 duplication/deletion: new cases and literature review. BMC Med Genet. 2015;16:12.
Ballout RA, Dickerson C, Wick MJ, et al. Int22h1/Int22h2‐mediated Xq28 duplication syndrome: de novo duplications, prenatal diagnoses, and additional phenotypic features. Hum Mutat. 2020;41(7):1238‐1249.
Ballout RA, El‐Hattab AW. The int22h1/int22h2‐mediated Xq28 duplication syndrome: an intersection between neurodevelopment, immunology, and cancer. Genes (Basel). 2021;12(6):860.
Ballout RA, El‐Hattab AW, Schaaf CP, Cheung SW. Xq28 duplication syndrome, Int22h1/Int22h2 mediated. In: Adam MP, Mirzaa GM, Pagon RA, et al., eds. GeneReviews®. University of Washington; 1993 Accessed June 21, 2023. http://www.ncbi.nlm.nih.gov/books/NBK349624/
Isrie M, Froyen G, Devriendt K, et al. Sporadic male patients with intellectual disability: contribution of X‐chromosome copy number variants. Eur J Med Genet. 2012;55(11):577‐585.
Andersen EF, Baldwin EE, Ellingwood S, Smith R, Lamb AN. Xq28 duplication overlapping the int22h‐1/int22h‐2 region and including RAB39B and CLIC2 in a family with intellectual and developmental disability. Am J Med Genet A. 2014;164A(7):1795‐1801.
Vanmarsenille L, Giannandrea M, Fieremans N, et al. Increased dosage of RAB39B affects neuronal development and could explain the cognitive impairment in male patients with distal Xq28 copy number gains. Hum Mutat. 2014;35(3):377‐383.
Antonarakis SE, Kazazian HH, Tuddenham EG. Molecular etiology of factor VIII deficiency in hemophilia A. Hum Mutat. 1995;5(1):1‐22.
Takano K, Liu D, Tarpey P, et al. An X‐linked channelopathy with cardiomegaly due to a CLIC2 mutation enhancing ryanodine receptor channel activity. Hum Mol Genet. 2012;21(20):4497‐4507.
Gregg RG, Metzenberg AB, Hogan K, Sekhon G, Laxova R. Waisman syndrome, a human X‐linked recessive basal ganglia disorder with mental retardation: localization to Xq27.3‐qter. Genomics. 1991;9(4):701‐706.
Wilson GR, Sim JC, McLean C, et al. Mutations in RAB39B cause X‐linked intellectual disability and early‐onset Parkinson disease with α‐synuclein pathology. Am J Hum Genet. 2014;95(6):729‐735.
Levy S, Sutton G, Ng PC, et al. The diploid genome sequence of an individual human. PLoS Biol. 2007;5(10):e254.
Lannoy N, Grisart B, Eeckhoudt S, et al. Intron 22 homologous regions are implicated in exons 1‐22 duplications of the F8 gene. Eur J Hum Genet. 2013;21(9):970‐976.
Jourdy Y, Chatron N, Fretigny M, et al. Molecular cytogenetic characterization of five F8 complex rearrangements: utility for haemophilia A genetic counselling. Haemophilia. 2017;23(4):e316‐e323.
Chen C, Xie X, Wu X, et al. Complex recombination with deletion in the F8 and duplication in the TMLHE mediated by int22h copies during early embryogenesis. Thromb Haemost. 2017;117(8):1478‐1485.
Paciorkowski AR, Keppler‐Noreuil K, Robinson L, et al. Deletion 16p13.11 uncovers NDE1 mutations on the non‐deleted homolog and extends the spectrum of severe microcephaly to include fetal brain disruption. Am J Med Genet A. 2013;161(7):1523‐1530.
Girirajan S, Rosenfeld JA, Cooper GM, et al. A recurrent 16p12.1 microdeletion supports a two‐hit model for severe developmental delay. Nat Genet. 2010;42(3):203‐209.
Plenge RM, Stevenson RA, Lubs HA, Schwartz CE, Willard HF. Skewed X‐chromosome inactivation is a common feature of X‐linked mental retardation disorders. Am J Hum Genet. 2002;71(1):168‐173.
Van den Veyver IB. Skewed X inactivation in X‐linked disorders. Semin Reprod Med. 2001;19(2):183‐191.
Minks J, Robinson WP, Brown CJ. A skewed view of X chromosome inactivation. J Clin Invest. 2008;118(1):20‐23.
Shvetsova E, Sofronova A, Monajemi R, et al. Skewed X‐inactivation is common in the general female population. Eur J Hum Genet. 2019;27(3):455‐465.
Ross MT, Grafham DV, Coffey AJ, et al. The DNA sequence of the human X chromosome. Nature. 2005;434(7031):325‐337.