Description of Corynebacterium hiratae sp. nov. isolated from a human tissue bone a novel member of Corynebacterium Genus.

Corynebacterium Corynebacterium hiratae sp. nov. Classification Clinical infection Genomic taxonomy

Journal

Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
ISSN: 1678-4405
Titre abrégé: Braz J Microbiol
Pays: Brazil
ID NLM: 101095924

Informations de publication

Date de publication:
10 Apr 2024
Historique:
received: 09 10 2023
accepted: 02 04 2024
medline: 10 4 2024
pubmed: 10 4 2024
entrez: 10 4 2024
Statut: aheadofprint

Résumé

Corynebacterium spp. are widely disseminated in the environment, and they are part of the skin and mucosal microbiota of animals and humans. Reports of human infections by Corynebacterium spp. have increased considerably in recent years and the appearance of multidrug resistant isolates around the world has drawn attention. To describe a new species of Corynebacterium from human tissue bone is described after being misidentified using available methods. For taxonomic analyses, phylogenetic analysis of 16S rRNA and rpoB genes, in silico DNA-DNA hybridization, average nucleotide and amino acid identity, multilocus sequence analysis, and phylogenetic analysis based on the complete genome were used. Genomic taxonomic analyzes revealed values of in silico DNA-DNA hybridization, average nucleotide and amino acids identity below the values necessary for species characterization between the analyzed isolates and the closest phylogenetic relative Corynebacterium aurimucosum DSM 44532 Genomic taxonomic analyzes indicate that the isolates analyzed comprise a new species of the Corynebacterium genus, which we propose to name Corynebacterium hiratae sp. nov. with isolate 332

Sections du résumé

BACKGROUND BACKGROUND
Corynebacterium spp. are widely disseminated in the environment, and they are part of the skin and mucosal microbiota of animals and humans. Reports of human infections by Corynebacterium spp. have increased considerably in recent years and the appearance of multidrug resistant isolates around the world has drawn attention.
OBJECTIVES OBJECTIVE
To describe a new species of Corynebacterium from human tissue bone is described after being misidentified using available methods.
METHODS METHODS
For taxonomic analyses, phylogenetic analysis of 16S rRNA and rpoB genes, in silico DNA-DNA hybridization, average nucleotide and amino acid identity, multilocus sequence analysis, and phylogenetic analysis based on the complete genome were used.
FINDINGS RESULTS
Genomic taxonomic analyzes revealed values of in silico DNA-DNA hybridization, average nucleotide and amino acids identity below the values necessary for species characterization between the analyzed isolates and the closest phylogenetic relative Corynebacterium aurimucosum DSM 44532
MAIN CONCLUSIONS CONCLUSIONS
Genomic taxonomic analyzes indicate that the isolates analyzed comprise a new species of the Corynebacterium genus, which we propose to name Corynebacterium hiratae sp. nov. with isolate 332

Identifiants

DOI: 10.1007/s42770-024-01331-z PMID: 38598149
pubmed: 38598149
doi: 10.1007/s42770-024-01331-z
pii: 10.1007/s42770-024-01331-z
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro
ID : E-17/205.900/2022
Organisme : Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro
ID : E-26/202.088/2020
Organisme : Instituto Nacional de Ciência e Tecnologia da Criosfera
ID : 309948/2018-5
Organisme : Secretaria de Ciencia y Tecnica, Universidad de Buenos Aires
ID : 20020170100109 BA

Informations de copyright

© 2024. The Author(s) under exclusive licence to Sociedade Brasileira de Microbiologia.

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Auteurs

Lincoln de Oliveira Sant'Anna (L)

Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil. lincolnsantanna2013@gmail.com.
ORCID: 0000-0002-6933-8961

Louisy Sanches Dos Santos (LS)

Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil.

Julianna Giordano Botelho Olivella (JGB)

Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil.

Mariana da Cruz Mota (M)

Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil.

Juliana Nunes Ramos (JN)

Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil.

Paulo Victor Pereira Baio (PVP)

Army Chemical and Pharmaceutical Laboratory, Ministry of Defense, Brasília, Brazil.

Danilo Jobim Passos Gil da Rocha (DJPG)

Institute of Health Sciences, Department of Biotechnology, Federal University of Bahia, Salvador, Brazil.

Verônica Viana Vieira (VV)

Faculty of Pharmacy and Biochemistry and Bacteriology, Department of Clinical Biochemistry, University of Buenos Aires, Autonomous City of Buenos Aires, Argentina.

Marisa Almuzara (M)

Interdisciplinary Laboratory of Medical Research, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.

Carlos Vay (C)

Interdisciplinary Laboratory of Medical Research, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.

Claudia Barberis (C)

Interdisciplinary Laboratory of Medical Research, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.

Thiago Luiz de Paula Castro (TLP)

Institute of Health Sciences, Department of Biotechnology, Federal University of Bahia, Salvador, Brazil.

Núbia Seyffert (N)

Institute of Health Sciences, Department of Biotechnology, Federal University of Bahia, Salvador, Brazil.

Luis Gustavo Carvalho Pacheco (LGC)

Institute of Health Sciences, Department of Biotechnology, Federal University of Bahia, Salvador, Brazil.

Ana Luíza Mattos-Guaraldi (AL)

Laboratory of Diphtheria and Corynebacteria of Clinical Relevance, Department of Microbiology, Immunology and Parasitology, State University of Rio de Janeiro, Vinte e Oito de Setembro 87, Fundos, 3º andar. Vila Isabel, Rio de Janeiro, RJ, CEP:20551-030, Brazil.

Classifications MeSH