An outbreak of COVID-19 after a pilgrimage to Medjugorje due to Delta sub-lineages.

Delta variant SARS-CoV-2 phylogenetic analysis pilgrimage

Journal

Journal of infection in developing countries
ISSN: 1972-2680
Titre abrégé: J Infect Dev Ctries
Pays: Italy
ID NLM: 101305410

Informations de publication

Date de publication:
31 Mar 2024
Historique:
received: 01 06 2023
accepted: 18 10 2023
medline: 18 4 2024
pubmed: 18 4 2024
entrez: 18 4 2024
Statut: epublish

Résumé

A COVID-19 outbreak occurred at the end of October 2021 among pilgrims returning from Medjugorje (Bosnia and Herzegovina). Whole genome sequencing (WGS) of SARS-CoV-2, epidemiological data, and phylogenetic analysis were used to reconstruct outbreak dynamics. The results suggest that only in one case, associated with the SARS-CoV-2 sub-lineage AY.9.2, it is possible to trace back the place of contagion to Medjugorje, while the other cases were likely to be acquired in the country of origin. The combined use of phylogenetic data derived from WGS, and epidemiological data allowed us to study epidemic dynamics and to formulate a possible hypothesis on the place of exposure to SARS-CoV-2. The identification of different sub-lineages of the SARS-CoV-2 Delta variant also suggested that different chains of transmission contributed to the outbreak.

Identifiants

pubmed: 38635610
doi: 10.3855/jidc.18652
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

332-336

Investigateurs

Caterina Serra (C)
Laura Firino (L)
Bianca Paglietti (B)
Claudia Piu (C)
Rosalba Govoni (R)
Vincenzo Lai (V)
Erica Mura (E)
Anna Puggioni (A)
Giulia Rocca (G)

Informations de copyright

Copyright (c) 2024 Alessandra Lo Presti, Salvatore Rubino, Gabriele Ibba, Luigina Ambrosio, Angela Di Martino, Federica Ferraro, Alessia Rapiti, Francesco Maraglino, Emanuela Maria Frisicale, Giovanni Rezza, Flavia Angioj, Sergio Uzzau, Maria Luciana Contini, Stefania Manca, Ferdinando Coghe, Germano Orrù, Anna Teresa Palamara, Paola Stefanelli, the AOUSS COVID team.

Déclaration de conflit d'intérêts

No Conflict of Interest is declared

Auteurs

Alessandra Lo Presti (A)

Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.

Salvatore Rubino (S)

Department of Biomedical Sciences, University of Sassari, Sassari, Italy.

Gabriele Ibba (G)

Department of Biomedical Sciences, University of Sassari, Sassari, Italy.

Luigina Ambrosio (L)

Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.

Angela Di Martino (A)

Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.

Federica Ferraro (F)

Ministry of Health, Directorate-General for Health Prevention, Rome, Italy.

Alessia Rapiti (A)

Ministry of Health, Directorate-General for Health Prevention, Rome, Italy.

Francesco Maraglino (F)

Ministry of Health, Directorate-General for Health Prevention, Rome, Italy.

Emanuela Maria Frisicale (EM)

Ministry of Health, Directorate-General for Health Prevention, Rome, Italy.

Giovanni Rezza (G)

Ministry of Health, Directorate-General for Health Prevention, Rome, Italy.

Flavia Angioj (F)

Microbiology and Virology Unit, Azienda Ospedaliera Universitaria, Sassari, Italy.

Sergio Uzzau (S)

Department of Biomedical Sciences, University of Sassari, Sassari, Italy.

Maria Luciana Contini (ML)

Servizio igiene e sanità pubblica, Azienda Ospedaliera Universitaria, Sassari, Italy.

Stefania Manca (S)

Servizio igiene e sanità pubblica, Azienda Ospedaliera Universitaria, Sassari, Italy.

Ferdinando Coghe (F)

Laboratorio Analisi Chimico Cliniche e Microbiologia, Azienda Ospedaliera Universitaria di Cagliari, Cagliari, Italy.

Germano Orrù (G)

Molecular Biology, Department of Surgical Sciences, University of Cagliari, Cagliari, Italy.

Anna Teresa Palamara (AT)

Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.

Paola Stefanelli (P)

Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.

Classifications MeSH