Replicative senescence and high glucose induce the accrual of self-derived cytosolic nucleic acids in human endothelial cells.


Journal

Cell death discovery
ISSN: 2058-7716
Titre abrégé: Cell Death Discov
Pays: United States
ID NLM: 101665035

Informations de publication

Date de publication:
20 Apr 2024
Historique:
received: 20 01 2024
accepted: 10 04 2024
revised: 09 04 2024
medline: 21 4 2024
pubmed: 21 4 2024
entrez: 20 4 2024
Statut: epublish

Résumé

Recent literature shows that loss of replicative ability and acquisition of a proinflammatory secretory phenotype in senescent cells is coupled with the build-in of nucleic acids in the cytoplasm. Its implication in human age-related diseases is under scrutiny. In human endothelial cells (ECs), we assessed the accumulation of intracellular nucleic acids during in vitro replicative senescence and after exposure to high glucose concentrations, which mimic an in vivo condition of hyperglycemia. We showed that exposure to high glucose induces senescent-like features in ECs, including telomere shortening and proinflammatory cytokine release, coupled with the accrual in the cytoplasm of telomeres, double-stranded DNA and RNA (dsDNA, dsRNA), as well as RNA:DNA hybrid molecules. Senescent ECs showed an activation of the dsRNA sensors RIG-I and MDA5 and of the DNA sensor TLR9, which was not paralleled by the involvement of the canonical (cGAS) and non-canonical (IFI16) activation of the STING pathway. Under high glucose conditions, only a sustained activation of TLR9 was observed. Notably, senescent cells exhibit increased proinflammatory cytokine (IL-1β, IL-6, IL-8) production without a detectable secretion of type I interferon (IFN), a phenomenon that can be explained, at least in part, by the accumulation of methyl-adenosine containing RNAs. At variance, exposure to exogenous nucleic acids enhances both IL-6 and IFN-β1 expression in senescent cells. This study highlights the accrual of cytoplasmic nucleic acids as a marker of senescence-related endothelial dysfunction, that may play a role in dysmetabolic age-related diseases.

Identifiants

pubmed: 38643201
doi: 10.1038/s41420-024-01954-z
pii: 10.1038/s41420-024-01954-z
doi:

Types de publication

Journal Article

Langues

eng

Pagination

184

Subventions

Organisme : Ministero della Salute (Ministry of Health, Italy)
ID : Ricerca corrente
Organisme : Università Politecnica delle Marche (Polytechnic University of the Marche)
ID : RSA grant

Informations de copyright

© 2024. The Author(s).

Références

Coppé JP, Patil CK, Rodier F, Sun Y, Munoz DP, Goldstein J, et al. Senescence-associated secretory phenotypes reveal cell-nonautonomous functions of oncogenic RAS and the p53 tumor suppressor. PLoS Biol. 2008;6:2853–68.
pubmed: 19053174
Takahashi A, Loo TM, Okada R, Kamachi F, Watanabe Y, Wakita M, et al. Downregulation of cytoplasmic DNases is implicated in cytoplasmic DNA accumulation and SASP in senescent cells. Nat Commun. 2018;9:1249.
pubmed: 29593264 pmcid: 5871854
Gluck S, Ablasser A. Innate immunosensing of DNA in cellular senescence. Curr Opin Immunol. 2019;56:31–6.
pubmed: 30296662
Ablasser A, Chen ZJ. cGAS in action: expanding roles in immunity and inflammation. Science. 2019;363:eaat8657.
pubmed: 30846571
Mullani N, Porozhan Y, Mangelinck A, Rachez C, Costallat M, Batsche E, et al. Reduced RNA turnover as a driver of cellular senescence. Life Sci Alliance. 2021;4:e202000809.
pubmed: 33446491 pmcid: 7812316
Chen YG, Hur S. Cellular origins of dsRNA, their recognition and consequences. Nat Rev Mol Cell Biol. 2022;23:286–301.
pubmed: 34815573
Wang J, Li R, Lin H, Qiu Q, Lao M, Zeng S, et al. Accumulation of cytosolic dsDNA contributes to fibroblast-like synoviocytes-mediated rheumatoid arthritis synovial inflammation. Int Immunopharmacol. 2019;76:105791.
pubmed: 31472320
Crossley MP, Song C, Bocek MJ, Choi JH, Kousorous J, Sathirachinda A, et al. R-loop-derived cytoplasmic RNA-DNA hybrids activate an immune response. Nature. 2023;613:187–94.
pubmed: 36544021
Franceschi C, Bonafe M, Valensin S, Olivieri F, De Luca M, Ottaviani E, et al. Inflamm-aging. An evolutionary perspective on immunosenescence. Ann N Y Acad Sci. 2000;908:244–54.
pubmed: 10911963
Franceschi C, Garagnani P, Parini P, Giuliani C, Santoro A. Inflammaging: a new immune-metabolic viewpoint for age-related diseases. Nat Rev Endocrinol. 2018;14:576–90.
pubmed: 30046148
Storci G, De Carolis S, Olivieri F, Bonafe M. Changes in the biochemical taste of cytoplasmic and cell-free DNA are major fuels for inflamm-aging. Semin Immunol. 2018;40:6–16.
pubmed: 30227944
Vorotnikov AV, Khapchaev AY, Nickashin AV, Shirinsky VP. In vitro modeling of diabetes impact on vascular endothelium: are essentials engaged to tune metabolism? Biomedicines. 2022;10:3181.
pubmed: 36551937 pmcid: 9775148
Prattichizzo F, De Nigris V, Mancuso E, Spiga R, Giuliani A, Matacchione G, et al. Short-term sustained hyperglycaemia fosters an archetypal senescence-associated secretory phenotype in endothelial cells and macrophages. Redox Biol. 2018;15:170–81.
pubmed: 29253812
Wang W, Wang WH, Azadzoi KM, Dai P, Wang Q, Sun JB, et al. Alu RNA accumulation in hyperglycemia augments oxidative stress and impairs eNOS and SOD2 expression in endothelial cells. Mol Cell Endocrinol. 2016;426:91–100.
pubmed: 26891959
Fulop T, Witkowski JM, Olivieri F, Larbi A. The integration of inflammaging in age-related diseases. Semin Immunol. 2018;40:17–35.
pubmed: 30287177
Avelar RA, Ortega JG, Tacutu R, Tyler EJ, Bennett D, Binetti P, et al. A multidimensional systems biology analysis of cellular senescence in aging and disease. Genome Biol. 2020;21:91.
pubmed: 32264951 pmcid: 7333371
Gorgoulis V, Adams PD, Alimonti A, Bennett DC, Bischof O, Bishop C, et al. Cellular senescence: defining a path forward. Cell. 2019;179:813–27.
pubmed: 31675495
Smolka JA, Sanz LA, Hartono SR, Chedin F. Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids. J Cell Biol. 2021;220:e202004079.
pubmed: 33830170 pmcid: 8040515
Hemphill WO, Simpson SR, Liu M, Salsbury FR Jr., Hollis T, Grayson JM, et al. TREX1 as a novel immunotherapeutic target. Front Immunol. 2021;12:660184.
pubmed: 33868310 pmcid: 8047136
Yuan F, Dutta T, Wang L, Song L, Gu L, Qian L, et al. Human DNA exonuclease TREX1 is also an exoribonuclease that acts on single-stranded RNA. J Biol Chem. 2015;290:13344–53.
pubmed: 25855793 pmcid: 4505584
Grieves JL, Fye JM, Harvey S, Grayson JM, Hollis T, Perrino FW. Exonuclease TREX1 degrades double-stranded DNA to prevent spontaneous lupus-like inflammatory disease. Proc Natl Acad Sci USA. 2015;112:5117–22.
pubmed: 25848017 pmcid: 4413332
Storci G, De Carolis S, Papi A, Bacalini MG, Gensous N, Marasco E, et al. Genomic stability, anti-inflammatory phenotype, and up-regulation of the RNAseH2 in cells from centenarians. Cell Death Differ. 2019;26:1845–58.
pubmed: 30622304 pmcid: 6748076
Rigby RE, Webb LM, Mackenzie KJ, Li Y, Leitch A, Reijns MA, et al. RNA:DNA hybrids are a novel molecular pattern sensed by TLR9. EMBO J. 2014;33:542–58.
pubmed: 24514026 pmcid: 3989650
McFadden MJ, McIntyre ABR, Mourelatos H, Abell NS, Gokhale NS, Ipas H, et al. Post-transcriptional regulation of antiviral gene expression by N6-methyladenosine. Cell Rep. 2021;34:108798.
pubmed: 33657363 pmcid: 7981787
Wagner H. The immunobiology of the TLR9 subfamily. Trends Immunol. 2004;25:381–6.
pubmed: 15207506
Mian MF, Ahmed AN, Rad M, Babaian A, Bowdish D, Ashkar AA. Length of dsRNA (poly I:C) drives distinct innate immune responses, depending on the cell type. J Leukoc Biol. 2013;94:1025–36.
pubmed: 23911868
Mensà E, Guescini M, Giuliani A, Bacalini MG, Ramini D, Corleone G, et al. Small extracellular vesicles deliver miR-21 and miR-217 as pro-senescence effectors to endothelial cells. J Extracell Vesicles. 2020;9:1725285.
pubmed: 32158519 pmcid: 7048230
Rehwinkel J, Gack MU. RIG-I-like receptors: their regulation and roles in RNA sensing. Nat Rev Immunol. 2020;20:537–51.
pubmed: 32203325 pmcid: 7094958
Sabbatinelli J, Ramini D, Giuliani A, Recchioni R, Spazzafumo L, Olivieri F. Connecting vascular aging and frailty in Alzheimer’s disease. Mech Ageing Dev. 2021;195:111444.
pubmed: 33539904
Bayaraa O, Inman CK, Thomas SA, Al Jallaf F, Alshaikh M, Idaghdour Y, et al. Hyperglycemic conditions induce rapid cell dysfunction-promoting transcriptional alterations in human aortic endothelial cells. Sci Rep. 2022;12:20912.
pubmed: 36463298 pmcid: 9719474
Zhao Y, Simon M, Seluanov A, Gorbunova V. DNA damage and repair in age-related inflammation. Nat Rev Immunol. 2023;23:75–89.
pubmed: 35831609
Ramini D, Latini S, Giuliani A, Matacchione G, Sabbatinelli J, Mensà E, et al. Replicative senescence-associated LINE1 methylation and LINE1-alu expression levels in human endothelial cells. Cells. 2022;11:3799.
pubmed: 36497059 pmcid: 9739197
Franceschi C, Garagnani P, Vitale G, Capri M, Salvioli S. Inflammaging and ‘Garb-aging. Trends Endocrinol Metab. 2017;28:199–212.
pubmed: 27789101
Amadio R, Piperno GM, Benvenuti F. Self-DNA sensing by cGAS-STING and TLR9 in autoimmunity: is the cytoskeleton in control? Front Immunol. 2021;12:657344.
pubmed: 34084165 pmcid: 8167430
Kowal K, Tkaczyk A, Zabek T, Pierzchala M, Slaska B. Comparative analysis of CpG sites and islands distributed in mitochondrial DNA of model organisms. Animals (Basel). 2020;10:665.
pubmed: 32290485
Lamphier MS, Sirois CM, Verma A, Golenbock DT, Latz E. TLR9 and the recognition of self and non-self nucleic acids. Ann N Y Acad Sci. 2006;1082:31–43.
pubmed: 17145922
Yang H, Wang H, Ren J, Chen Q, Chen ZJ. cGAS is essential for cellular senescence. Proc Natl Acad Sci USA. 2017;114:E4612–E20.
pubmed: 28533362 pmcid: 5468617
Baixauli F, Lopez-Otin C, Mittelbrunn M. Exosomes and autophagy: coordinated mechanisms for the maintenance of cellular fitness. Front Immunol. 2014;5:403.
pubmed: 25191326 pmcid: 4138502
Hosseinkhani B, van den Akker NMS, Molin DGM, Michiels L. Subpopulations of extracellular vesicles released by TNF-alpha -triggered human endothelial cells promote vascular inflammation and monocyte migration. J Extracell Vesicles. 2020;9:1801153.
Lee JH, Chiang C, Gack MU. Endogenous nucleic acid recognition by RIG-I-like receptors and cGAS. J Interferon Cytokine Res. 2019;39:450–8.
pubmed: 31066607 pmcid: 6660835
Lou X, Wang JJ, Wei YQ, Sun JJ. Emerging role of RNA modification N6-methyladenosine in immune evasion. Cell Death Dis. 2021;12:300.
pubmed: 33741904 pmcid: 7979796
Gao Y, Vasic R, Song Y, Teng R, Liu C, Gbyli R, et al. m(6)A modification prevents formation of endogenous double-stranded RNAs and deleterious innate immune responses during hematopoietic development. Immunity. 2020;52:1007–21.e8.
pubmed: 32497523 pmcid: 7408742
Liu F, Wu S, Ren H, Gu J. Klotho suppresses RIG-I-mediated senescence-associated inflammation. Nat. Cell Biol. 2011;13:254–62.
pubmed: 21336305
Kumar V. The trinity of cGAS, TLR9, and ALRs guardians of the cellular galaxy against host-derived self-DNA. Front Immunol. 2020;11:624597.
pubmed: 33643304
Lassig C, Hopfner KP. Discrimination of cytosolic self and non-self RNA by RIG-I-like receptors. J Biol Chem. 2017;292:9000–9.
pubmed: 28411239 pmcid: 5454087
Skopelja-Gardner S, An J, Elkon KB. Role of the cGAS-STING pathway in systemic and organ-specific diseases. Nat Rev Nephrol. 2022;18:558–72.
pubmed: 35732833 pmcid: 9214686
Hu MM, Shu HB. Innate immune response to cytoplasmic DNA: mechanisms and diseases. Annu Rev Immunol. 2020;38:79–98.
pubmed: 31800327
Yu L, Liu P. Cytosolic DNA sensing by cGAS: regulation, function, and human diseases. Signal Transduct Target Ther. 2021;6:170.
pubmed: 33927185 pmcid: 8085147
Cawthon RM. Telomere measurement by quantitative PCR. Nucleic Acids Res. 2002;30:e47.
pubmed: 12000852 pmcid: 115301
Rueden CT, Schindelin J, Hiner MC, DeZonia BE, Walter AE, Arena ET, et al. ImageJ2: ImageJ for the next generation of scientific image data. BMC Bioinform. 2017;18:529.
Riccio M, Dembic M, Cinti C, Santi S. Multifluorescence labeling and colocalization analyses. Methods Mol. Biol. 2004;285:171–7.
pubmed: 15269412
Cavallo C, Merli G, Zini N, D’Adamo S, Cattini L, Guescini M, et al. Small extracellular vesicles from inflamed adipose derived stromal cells enhance the NF-kappaB-dependent inflammatory/catabolic environment of osteoarthritis. Stem Cells Int. 2022;2022:9376338.
pubmed: 35898656 pmcid: 9314187
de Magalhaes JP, Costa J, Toussaint O. HAGR: the human ageing genomic resources. Nucleic Acids Res. 2005;33:D537–43. Database issue
pubmed: 15608256
Tacutu R, Thornton D, Johnson E, Budovsky A, Barardo D, Craig T, et al. Human ageing genomic resources: new and updated databases. Nucleic Acids Res. 2018;46:D1083–D90. D1
pubmed: 29121237
Fabregat A, Korninger F, Viteri G, Sidiropoulos K, Marin-Garcia P, Ping P, et al. Reactome graph database: efficient access to complex pathway data. PLoS Comput Biol. 2018;14:e1005968.
pubmed: 29377902 pmcid: 5805351

Auteurs

Deborah Ramini (D)

Clinic of Laboratory and Precision Medicine, IRCCS INRCA, Ancona, Italy.

Angelica Giuliani (A)

Department of Clinical and Molecular Sciences, DISCLIMO, Università Politecnica delle Marche, Ancona, Italy.

Katarzyna Malgorzata Kwiatkowska (KM)

Department of Medical and Surgical Sciences (DIMEC), University of Bologna, Bologna, Italy.

Michele Guescini (M)

Department of Biomolecular Science, University of Urbino Carlo Bo, Urbino, Italy.

Gianluca Storci (G)

IRCCS Azienda Ospedaliero Universitaria di Bologna, Bologna, Italy.

Emanuela Mensà (E)

Department of Clinical and Molecular Sciences, DISCLIMO, Università Politecnica delle Marche, Ancona, Italy.

Rina Recchioni (R)

Clinic of Laboratory and Precision Medicine, IRCCS INRCA, Ancona, Italy.

Luciano Xumerle (L)

Personal Genomics s.r.l, Verona, Italy.

Elisa Zago (E)

Personal Genomics s.r.l, Verona, Italy.

Jacopo Sabbatinelli (J)

Clinic of Laboratory and Precision Medicine, IRCCS INRCA, Ancona, Italy. j.sabbatinelli@univpm.it.
Department of Clinical and Molecular Sciences, DISCLIMO, Università Politecnica delle Marche, Ancona, Italy. j.sabbatinelli@univpm.it.

Spartaco Santi (S)

CNR Institute of Molecular Genetics "Luigi Luca Cavalli-Sforza" - Unit of Bologna, Bologna, Italy. spartaco.santi@cnr.it.
IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy. spartaco.santi@cnr.it.

Paolo Garagnani (P)

Department of Medical and Surgical Sciences (DIMEC), University of Bologna, Bologna, Italy.
IRCCS Azienda Ospedaliero Universitaria di Bologna, Bologna, Italy.

Massimiliano Bonafè (M)

Department of Medical and Surgical Sciences (DIMEC), University of Bologna, Bologna, Italy.
IRCCS Azienda Ospedaliero Universitaria di Bologna, Bologna, Italy.

Fabiola Olivieri (F)

Clinic of Laboratory and Precision Medicine, IRCCS INRCA, Ancona, Italy.
Department of Clinical and Molecular Sciences, DISCLIMO, Università Politecnica delle Marche, Ancona, Italy.

Classifications MeSH