Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References.


Journal

Annual review of genomics and human genetics
ISSN: 1545-293X
Titre abrégé: Annu Rev Genomics Hum Genet
Pays: United States
ID NLM: 100911346

Informations de publication

Date de publication:
25 Apr 2024
Historique:
medline: 26 4 2024
pubmed: 26 4 2024
entrez: 25 4 2024
Statut: aheadofprint

Résumé

The Human Genome Project was an enormous accomplishment, providing a foundation for countless explorations into the genetics and genomics of the human species. Yet for many years, the human genome reference sequence remained incomplete and lacked representation of human genetic diversity. Recently, two major advances have emerged to address these shortcomings: complete gap-free human genome sequences, such as the one developed by the Telomere-to-Telomere Consortium, and high-quality pangenomes, such as the one developed by the Human Pangenome Reference Consortium. Facilitated by advances in long-read DNA sequencing and genome assembly algorithms, complete human genome sequences resolve regions that have been historically difficult to sequence, including centromeres, telomeres, and segmental duplications. In parallel, pangenomes capture the extensive genetic diversity across populations worldwide. Together, these advances usher in a new era of genomics research, enhancing the accuracy of genomic analysis, paving the path for precision medicine, and contributing to deeper insights into human biology.

Identifiants

pubmed: 38663087
doi: 10.1146/annurev-genom-021623-081639
doi:

Types de publication

Journal Article Review

Langues

eng

Sous-ensembles de citation

IM

Auteurs

Dylan J Taylor (DJ)

1Department of Biology, Johns Hopkins University, Baltimore, Maryland, USA; email: dtaylo95@jhu.edu, rajiv.mccoy@jhu.edu, mschatz@cs.jhu.edu.

Jordan M Eizenga (JM)

2Genomics Institute, University of California, Santa Cruz, California, USA; email: jeizenga@ucsc.edu, khmiga@ucsc.edu, bpaten@ucsc.edu.

Qiuhui Li (Q)

3Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA; email: qli111@jh.edu, arun.das@jhu.edu.

Arun Das (A)

3Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA; email: qli111@jh.edu, arun.das@jhu.edu.

Katharine M Jenike (KM)

4Department of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA; email: kjenike1@jh.edu.

Eimear E Kenny (EE)

5Institute for Genomic Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA; email: eimear.kenny@mssm.edu.

Karen H Miga (KH)

2Genomics Institute, University of California, Santa Cruz, California, USA; email: jeizenga@ucsc.edu, khmiga@ucsc.edu, bpaten@ucsc.edu.
6Department of Biomolecular Engineering, University of California, Santa Cruz, California, USA.

Jean Monlong (J)

7Institut de Recherche en Santé Digestive, Université de Toulouse, INSERM, INRA, ENVT, UPS, Toulouse, France; email: jean.monlong@inserm.fr.

Rajiv C McCoy (RC)

1Department of Biology, Johns Hopkins University, Baltimore, Maryland, USA; email: dtaylo95@jhu.edu, rajiv.mccoy@jhu.edu, mschatz@cs.jhu.edu.

Benedict Paten (B)

2Genomics Institute, University of California, Santa Cruz, California, USA; email: jeizenga@ucsc.edu, khmiga@ucsc.edu, bpaten@ucsc.edu.
6Department of Biomolecular Engineering, University of California, Santa Cruz, California, USA.

Michael C Schatz (MC)

1Department of Biology, Johns Hopkins University, Baltimore, Maryland, USA; email: dtaylo95@jhu.edu, rajiv.mccoy@jhu.edu, mschatz@cs.jhu.edu.
3Department of Computer Science, Johns Hopkins University, Baltimore, Maryland, USA; email: qli111@jh.edu, arun.das@jhu.edu.

Classifications MeSH