Improving multiple sclerosis lesion segmentation across clinical sites: A federated learning approach with noise-resilient training.

Federated learning Label correction Lesion segmentation Multiple sclerosis Noisy labels

Journal

Artificial intelligence in medicine
ISSN: 1873-2860
Titre abrégé: Artif Intell Med
Pays: Netherlands
ID NLM: 8915031

Informations de publication

Date de publication:
17 Apr 2024
Historique:
received: 26 08 2023
revised: 28 03 2024
accepted: 15 04 2024
medline: 4 5 2024
pubmed: 4 5 2024
entrez: 3 5 2024
Statut: aheadofprint

Résumé

Accurately measuring the evolution of Multiple Sclerosis (MS) with magnetic resonance imaging (MRI) critically informs understanding of disease progression and helps to direct therapeutic strategy. Deep learning models have shown promise for automatically segmenting MS lesions, but the scarcity of accurately annotated data hinders progress in this area. Obtaining sufficient data from a single clinical site is challenging and does not address the heterogeneous need for model robustness. Conversely, the collection of data from multiple sites introduces data privacy concerns and potential label noise due to varying annotation standards. To address this dilemma, we explore the use of the federated learning framework while considering label noise. Our approach enables collaboration among multiple clinical sites without compromising data privacy under a federated learning paradigm that incorporates a noise-robust training strategy based on label correction. Specifically, we introduce a Decoupled Hard Label Correction (DHLC) strategy that considers the imbalanced distribution and fuzzy boundaries of MS lesions, enabling the correction of false annotations based on prediction confidence. We also introduce a Centrally Enhanced Label Correction (CELC) strategy, which leverages the aggregated central model as a correction teacher for all sites, enhancing the reliability of the correction process. Extensive experiments conducted on two multi-site datasets demonstrate the effectiveness and robustness of our proposed methods, indicating their potential for clinical applications in multi-site collaborations to train better deep learning models with lower cost in data collection and annotation.

Identifiants

pubmed: 38701636
pii: S0933-3657(24)00114-3
doi: 10.1016/j.artmed.2024.102872
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

102872

Informations de copyright

Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest DW, KK, LL, C-CS, HW, GZ and CW are employees at Sydney Neuroimaging Analysis Centre, Australia. AN used to be the employee of Sydney Neuroimaging Analysis Centre, Australia when the paper was built. LB and WO are now employees in Shanghai AI Lab, China. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. We affirm that the information provided in this declaration is accurate and complete to the best of our knowledge.

Auteurs

Lei Bai (L)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; School of Electrical and Information Engineering, The University of Sydney, NSW 2006, Australia.

Dongang Wang (D)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia. Electronic address: dongang.wang@sydney.edu.au.

Hengrui Wang (H)

Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia.

Michael Barnett (M)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia; Royal Prince Alfred Hospital, NSW, 2050, Australia.

Mariano Cabezas (M)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia.

Weidong Cai (W)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; School of Computer Science, The University of Sydney, NSW 2006, Australia.

Fernando Calamante (F)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; School of Biomedical Engineering, The University of Sydney, NSW 2006, Australia; Sydney Imaging, The University of Sydney, NSW 2006, Australia.

Kain Kyle (K)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia.

Dongnan Liu (D)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; School of Computer Science, The University of Sydney, NSW 2006, Australia.

Linda Ly (L)

Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia.

Aria Nguyen (A)

Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia.

Chun-Chien Shieh (CC)

Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia.

Ryan Sullivan (R)

School of Biomedical Engineering, The University of Sydney, NSW 2006, Australia; Australian Imaging Service, NSW 2006, Australia.

Geng Zhan (G)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia.

Wanli Ouyang (W)

School of Electrical and Information Engineering, The University of Sydney, NSW 2006, Australia.

Chenyu Wang (C)

Brain and Mind Centre, The University of Sydney, NSW 2050, Australia; Sydney Neuroimaging Analysis Centre, 94 Mallett Street, NSW 2050, Australia. Electronic address: chenyu.wang@sydney.edu.au.

Classifications MeSH