colorectal cancer drug design molecular docking molecular dynamics simulation resveratrol derivatives

Journal

Frontiers in oncology
ISSN: 2234-943X
Titre abrégé: Front Oncol
Pays: Switzerland
ID NLM: 101568867

Informations de publication

Date de publication:
2024
Historique:
received: 24 12 2023
accepted: 25 03 2024
medline: 15 5 2024
pubmed: 15 5 2024
entrez: 15 5 2024
Statut: epublish

Résumé

Colorectal cancer is the second leading cause of cancer-related deaths. In 2018, there were an estimated 1.8 million cases, and this number is expected to increase to 2.2 million by 2030. Despite its prevalence, the current therapeutic option has a lot of side effects and limitations. Therefore, this study was designed to employ a computational approach for the identification of anti-cancer inhibitors against colorectal cancer using Resveratrol derivatives. Initially, the pass prediction spectrum of 50 derivatives was conducted and selected top seven compounds based on the maximum pass prediction score. After that, a comprehensive analysis, including Lipinski Rule, pharmacokinetics, ADMET profile study, molecular orbitals analysis, molecular docking, molecular dynamic simulations, and MM-PBSA binding free energy calculations. The reported binding affinity ranges of Resveratrol derivatives from molecular docking were -6.1 kcal/mol to -7.9 kcal/mol against the targeted receptor of human armadillo repeats domain of adenomatous polyposis coli (APC) (PDB ID: 3NMW). Specifically, our findings reported that two compounds [(03) Resveratrol 3-beta-mono-D-glucoside, and (29) Resveratrol 3-Glucoside] displayed the highest level of effectiveness compared to all other derivatives (-7.7 kcal/mol and -7.9 kcal/mol), and favorable drug-likeness, and exceptional safety profiles. Importantly, almost all the molecules were reported as free from toxic effects. Subsequently, molecular dynamic simulations conducted over 100ns confirmed the stability of the top two ligand-protein complexes. These findings suggest that Resveratrol derivatives may be effective drug candidate to manage the colorectal cancer. However, further experimental research, such as

Identifiants

pubmed: 38746675
doi: 10.3389/fonc.2024.1360745
pmc: PMC11091374
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1360745

Informations de copyright

Copyright © 2024 Akash, Islam, Bhuiyan, Islam, Bayıl, Saleem, Albadrani, Al-Ghadi and Abdel-Daim.

Déclaration de conflit d'intérêts

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Auteurs

Shopnil Akash (S)

Department of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Ashulia, Dhaka, Bangladesh.

Md Rezaul Islam (MR)

Department of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Ashulia, Dhaka, Bangladesh.

Abdul Ali Bhuiyan (AA)

Department of Pharmacy, Pabna University of Science and Technology, Pabna, Bangladesh.

Mirza Nafeul Islam (MN)

Department of Pharmacy, University of Rajshahi, Rajshahi, Bangladesh.

Imren Bayıl (I)

Department of Bioinformatics and Computational Biology, Gaziantep University, Gaziantep, Türkiye.

Rasha Mohammed Saleem (RM)

Department of Laboratory Medicine, Faculty of Applied Medical Sciences, Al-Baha University, Al-Baha, Saudi Arabia.

Ghadeer M Albadrani (GM)

Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.

Muath Q Al-Ghadi (MQ)

Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia.

Mohamed M Abdel-Daim (MM)

Department of Pharmaceutical Sciences, Pharmacy Program, Batterjee Medical College, Jeddah, Saudi Arabia.
Pharmacology Department, Faculty of Veterinary Medicine, Suez Canal University, Ismailia, Egypt.

Classifications MeSH