Dynamic Personality of Proteins and Effect of the Molecular Environment.


Journal

The journal of physical chemistry letters
ISSN: 1948-7185
Titre abrégé: J Phys Chem Lett
Pays: United States
ID NLM: 101526034

Informations de publication

Date de publication:
16 May 2024
Historique:
medline: 16 5 2024
pubmed: 16 5 2024
entrez: 16 5 2024
Statut: aheadofprint

Résumé

Protein dynamics display distinct traits that are linked to their specific biological function. However, the interplay between intrinsic dynamics and the molecular environment on protein stability remains poorly understood. In this study, we investigate, by incoherent neutron scattering, the subnanosecond time scale dynamics of three model proteins: the mesophilic lysozyme, the thermophilic thermolysin, and the intrinsically disordered β-casein. Moreover, we address the influence of water, glycerol, and glucose, which create progressively more viscous matrices around the protein surface. By comparing the protein thermal fluctuations, we find that the internal dynamics of thermolysin are less affected by the environment compared to lysozyme and β-casein. We ascribe this behavior to the protein dynamic personality, i.e., to the stiffer dynamics of the thermophilic protein that contrasts the influence of the environment. Remarkably, lysozyme and thermolysin in all molecular environments reach a critical common flexibility when approaching the calorimetric melting temperature.

Identifiants

pubmed: 38752860
doi: 10.1021/acs.jpclett.4c00017
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

5543-5548

Auteurs

Daniele Sonaglioni (D)

Physics Department, University of Pisa, Largo Pontecorvo 3, 56127 Pisa, Italy.

Valeria Libera (V)

Department of Physics and Geology, University of Perugia, via Alessandro Pascoli, 06123 Perugia, Italy.

Elpidio Tombari (E)

Istituto per i Processi Chimico-Fisici del CNR, via G. Moruzzi 1, 56124 Pisa, Italy.

Judith Peters (J)

Université Grenoble Alpes, CNRS, LiPhy, 38400 St Martin d'Heres, France.
Institut Laue Langevin, 38000 Grenoble, France.
Institut Universitaire de France, 75005 Paris, France.

Francesca Natali (F)

Institut Laue Langevin, 38000 Grenoble, France.
CNR-IOM and INSIDE@ILL c/o OGG, 71 avenue des Martyrs, CEDEX 9, 38042 Grenoble, France.

Caterina Petrillo (C)

Department of Physics and Geology, University of Perugia, via Alessandro Pascoli, 06123 Perugia, Italy.

Lucia Comez (L)

CNR-IOM, Department of Physics and Geology, University of Perugia, via Alessandro Pascoli, 06123 Perugia, Italy.

Simone Capaccioli (S)

Physics Department, University of Pisa, Largo Pontecorvo 3, 56127 Pisa, Italy.
Istituto per i Processi Chimico-Fisici del CNR, via G. Moruzzi 1, 56124 Pisa, Italy.
CISUP, Centro per l'Integrazione della Strumentazione dell'Università di Pisa, Lungarno Pacinotti 43, Pisa 56126, Italy.

Alessandro Paciaroni (A)

Department of Physics and Geology, University of Perugia, via Alessandro Pascoli, 06123 Perugia, Italy.

Classifications MeSH