D-TrAttUnet: Toward hybrid CNN-transformer architecture for generic and subtle segmentation in medical images.

Bone Metastasis Convolutional Neural Network Covid-19 Deep learning Segmentation Transformer Unet

Journal

Computers in biology and medicine
ISSN: 1879-0534
Titre abrégé: Comput Biol Med
Pays: United States
ID NLM: 1250250

Informations de publication

Date de publication:
11 May 2024
Historique:
received: 14 11 2023
revised: 16 04 2024
accepted: 09 05 2024
medline: 20 5 2024
pubmed: 20 5 2024
entrez: 19 5 2024
Statut: aheadofprint

Résumé

Over the past two decades, machine analysis of medical imaging has advanced rapidly, opening up significant potential for several important medical applications. As complicated diseases increase and the number of cases rises, the role of machine-based imaging analysis has become indispensable. It serves as both a tool and an assistant to medical experts, providing valuable insights and guidance. A particularly challenging task in this area is lesion segmentation, a task that is challenging even for experienced radiologists. The complexity of this task highlights the urgent need for robust machine learning approaches to support medical staff. In response, we present our novel solution: the D-TrAttUnet architecture. This framework is based on the observation that different diseases often target specific organs. Our architecture includes an encoder-decoder structure with a composite Transformer-CNN encoder and dual decoders. The encoder includes two paths: the Transformer path and the Encoders Fusion Module path. The Dual-Decoder configuration uses two identical decoders, each with attention gates. This allows the model to simultaneously segment lesions and organs and integrate their segmentation losses. To validate our approach, we performed evaluations on the Covid-19 and Bone Metastasis segmentation tasks. We also investigated the adaptability of the model by testing it without the second decoder in the segmentation of glands and nuclei. The results confirmed the superiority of our approach, especially in Covid-19 infections and the segmentation of bone metastases. In addition, the hybrid encoder showed exceptional performance in the segmentation of glands and nuclei, solidifying its role in modern medical image analysis.

Identifiants

pubmed: 38763066
pii: S0010-4825(24)00675-9
doi: 10.1016/j.compbiomed.2024.108590
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

108590

Informations de copyright

Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Fares Bougourzi (F)

Junia, UMR 8520, CNRS, Centrale Lille, University of Polytechnique Hauts-de-France, 59000 Lille, France. Electronic address: fares.bougourzi@junia.com.

Fadi Dornaika (F)

University of the Basque Country UPV/EHU, San Sebastian, Spain; IKERBASQUE, Basque Foundation for Science, Bilbao, Spain. Electronic address: fadi.dornaika@ehu.eus.

Cosimo Distante (C)

Institute of Applied Sciences and Intelligent Systems, National Research Council of Italy, 73100 Lecce, Italy. Electronic address: cosimo.distante@cnr.it.

Abdelmalik Taleb-Ahmed (A)

Université Polytechnique Hauts-de-France, Université de Lille, CNRS, Valenciennes, 59313, Hauts-de-France, France. Electronic address: Abdelmalik.Taleb-Ahmed@uphf.fr.

Classifications MeSH