Development of a Robust Read-Across Model for the Prediction of Biological Potency of Novel Peroxisome Proliferator-Activated Receptor Delta Agonists.

Isalos Analytics Platform PPARδ agonists in silico modelling machine learning molecular docking

Journal

International journal of molecular sciences
ISSN: 1422-0067
Titre abrégé: Int J Mol Sci
Pays: Switzerland
ID NLM: 101092791

Informations de publication

Date de publication:
10 May 2024
Historique:
received: 01 04 2024
revised: 02 05 2024
accepted: 03 05 2024
medline: 25 5 2024
pubmed: 25 5 2024
entrez: 25 5 2024
Statut: epublish

Résumé

A robust predictive model was developed using 136 novel peroxisome proliferator-activated receptor delta (PPARδ) agonists, a distinct subtype of lipid-activated transcription factors of the nuclear receptor superfamily that regulate target genes by binding to characteristic sequences of DNA bases. The model employs various structural descriptors and docking calculations and provides predictions of the biological activity of PPARδ agonists, following the criteria of the Organization for Economic Co-operation and Development (OECD) for the development and validation of quantitative structure-activity relationship (QSAR) models. Specifically focused on small molecules, the model facilitates the identification of highly potent and selective PPARδ agonists and offers a read-across concept by providing the chemical neighbours of the compound under study. The model development process was conducted on Isalos Analytics Software (v. 0.1.17) which provides an intuitive environment for machine-learning applications. The final model was released as a user-friendly web tool and can be accessed through the Enalos Cloud platform's graphical user interface (GUI).

Identifiants

pubmed: 38791255
pii: ijms25105216
doi: 10.3390/ijms25105216
pii:
doi:

Substances chimiques

PPAR delta 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : H2020
ID : 101037509

Auteurs

Maria Antoniou (M)

Department of Chemoinformatics, NovaMechanics Ltd., Nicosia 1046, Cyprus.
Department of ChemoInformatics, NovaMechanics MIKE, 18545 Piraeus, Greece.
Entelos Institute, Larnaca 6059, Cyprus.

Konstantinos D Papavasileiou (KD)

Department of Chemoinformatics, NovaMechanics Ltd., Nicosia 1046, Cyprus.
Department of ChemoInformatics, NovaMechanics MIKE, 18545 Piraeus, Greece.
Entelos Institute, Larnaca 6059, Cyprus.

Georgia Melagraki (G)

Division of Physical Sciences & Applications, Hellenic Military Academy, 16672 Vari, Greece.

Francesco Dondero (F)

Entelos Institute, Larnaca 6059, Cyprus.
Department of Science and Technological Innovation, Università del Piemonte Orientale, 15121 Alessandria, Italy.

Iseult Lynch (I)

Entelos Institute, Larnaca 6059, Cyprus.
School of Geography, Earth and Environmental Sciences, University of Birmingham Edgbaston, Birmingham B15 2TT, UK.

Antreas Afantitis (A)

Department of Chemoinformatics, NovaMechanics Ltd., Nicosia 1046, Cyprus.
Department of ChemoInformatics, NovaMechanics MIKE, 18545 Piraeus, Greece.
Entelos Institute, Larnaca 6059, Cyprus.

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Classifications MeSH