Unveiling the traits of antibiotic resistance and virulence in Escherichia coli obtained from poultry waste.

Antibiotic resistance Avian pathogenic Escherichia coli Food chain, virulence Poultry wastes

Journal

Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
ISSN: 1678-4405
Titre abrégé: Braz J Microbiol
Pays: Brazil
ID NLM: 101095924

Informations de publication

Date de publication:
29 May 2024
Historique:
received: 17 11 2023
accepted: 12 04 2024
medline: 29 5 2024
pubmed: 29 5 2024
entrez: 29 5 2024
Statut: aheadofprint

Résumé

Antibiotic resistance and virulence factors in avian pathogenic Escherichia coli (APEC) have become significant concerns, contributing to adverse environmental effects. The extensive use of antibiotics in poultry farming has resulted in the emergence of antibiotic-resistant APEC strains. This study prioritizes the molecular screening of APEC to uncover their antibiotic resistance and virulence attributes, with specific attention to their environmental impact. To address the imperative of understanding APEC pathogenesis, our study analyzed 50 poultry waste samples including 10 poultry litter, 15 fecal matter, 15 wastewater, and 10 anatomical waste samples. For the presence of virulence genes, 35 Escherichia coli isolates were subjected to molecular characterization. Amongst these, 27 were APEC strains demonstrating the presence of at least four virulence genes each. Notably, virulence genes such as fimH, ompA, ybjX, waaL, cvaC, hlyF, iss, ompT, and iroN were observed among all the E. coli isolates. Furthermore, eleven of the APEC strains exhibited resistance to tetracycline, ampicillin, sulphonamides, and fluoroquinolones.These findings highlight the role of APEC as a potential source of environmental pollution serving as a reservoir for virulence and resistance genes. Understanding the dynamics of antibiotic resistance and virulence in APEC is essential due to its potential threat to broiler chickens and the broader population through the food chain, intensifying concerns related to environmental pollution. Recognizing the ecological impact of APEC is essential for developing effective strategies to mitigate environmental pollution and safeguard the health of ecosystems and human populations.

Identifiants

pubmed: 38809497
doi: 10.1007/s42770-024-01367-1
pii: 10.1007/s42770-024-01367-1
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Informations de copyright

© 2024. The Author(s) under exclusive licence to Sociedade Brasileira de Microbiologia.

Références

Prestinaci F, Pezzotti P, Pantosti A (2015) Antimicrobial resistance: a global multifaceted phenomenon. Pathog Glob health 109(7):309–318. https://doi.org/10.1179/2047773215Y.0000000030
doi: 10.1179/2047773215Y.0000000030 pubmed: 26343252 pmcid: 4768623
Ghunaim H, Abu-Madi MA, Kariyawasam S (2014) Advances in vaccination against avian pathogenic Escherichia coli respiratory disease: potentials and limitations. Vet Microbiol 172(1–2):13–22. https://doi.org/10.1016/j.vetmic.2014.04.019
doi: 10.1016/j.vetmic.2014.04.019 pubmed: 24878325
Chopra I, Roberts M (2001) Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance. Microbiol Mol Biol Rev 65(2):232–260. https://doi.org/10.1128/mmbr.65.2.232-260.2001
doi: 10.1128/mmbr.65.2.232-260.2001 pubmed: 11381101 pmcid: 99026
Mitra A, Majumder D, Mishra M, Sarkar S (2021) Poultry farming: prospects and impediments in India. Saudi J Humanit Soc Sci 6(6):193–198. https://doi.org/10.36348/sjhss.2021.v06i06.004
doi: 10.36348/sjhss.2021.v06i06.004
Biswal J, Vijayalakshmy K, Rahman H (2020) Impact of COVID-19 and associated lockdown on livestock and poultry sectors in India. Vet World 13(9):1928. 10.14202%2Fvetworld.2020.1928–1933
Hu J, Afayibo DJA, Zhang B, Zhu H, Yao L, Guo W, Wang X, Wang Z, Wang D, Peng H, Tian M (2022) Characteristics, pathogenic mechanism, zoonotic potential, drug resistance, and prevention of avian pathogenic Escherichia coli (APEC). Front Microbiol 13:1049391. https://doi.org/10.3389/fmicb.2022.1049391
doi: 10.3389/fmicb.2022.1049391 pubmed: 36583051 pmcid: 9793750
Helmy YA, Taha-Abdelaziz K, Hawwas HAEH, Ghosh S, AlKafaas SS, Moawad MM, Saied EM, Kassem II, Mawad AM (2023) Antimicrobial Resistance and Recent Alternatives to Antibiotics for the Control of Bacterial Pathogens with an Emphasis on Foodborne Pathogens. Antibiotics 12(2):274. https://doi.org/10.3390/antibiotics12020274
doi: 10.3390/antibiotics12020274 pubmed: 36830185 pmcid: 9952301
Meena PR, Yadav P, Hemlata H, Tejavath KK, Singh AP (2021) Poultry-origin extraintestinal Escherichia coli strains carrying the traits associated with urinary tract infection, sepsis, meningitis and avian colibacillosis in India. J Appl Microbiol 130(6):2087–2101. https://doi.org/10.1111/jam.14905
doi: 10.1111/jam.14905 pubmed: 33095966
Rezatofighi SE, Najafifar A, Askari Badouei M, Peighambari SM, Soltani M (2021) An integrated perspective on virulence-associated genes (VAGs), antimicrobial resistance (AMR), and phylogenetic clusters of pathogenic and non-pathogenic avian Escherichia coli. Front Vet Sci 8:758124. https://doi.org/10.3389/fvets.2021.758124
doi: 10.3389/fvets.2021.758124 pubmed: 34901248 pmcid: 8651559
Nhung NT, Chansiripornchai N, Carrique-Mas JJ (2017) Antimicrobial resistance in bacterial poultry pathogens: a review. Front Vet Sci 4:126. https://doi.org/10.3389/fvets.2017.00126
doi: 10.3389/fvets.2017.00126 pubmed: 28848739 pmcid: 5554362
Kim JH, Lee HJ, Jeong OM, Kim DW, Jeong JY, Kwon YK, Kang MS (2021) High prevalence and variable fitness of fluoroquinolone-resistant avian pathogenic Escherichia coli isolated from chickens in Korea. Avian Pathol 50(2):151–160. https://doi.org/10.1080/03079457.2020.1855322
doi: 10.1080/03079457.2020.1855322 pubmed: 33242260
Hedman HD, Vasco KA, Zhang L (2020) A review of antimicrobial resistance in poultry farming within low-resource settings. Animals 10(8):1264. https://doi.org/10.3390/ani10081264
doi: 10.3390/ani10081264 pubmed: 32722312 pmcid: 7460429
Kathayat D, Lokesh D, Ranjit S, Rajashekara G (2021) Avian pathogenic Escherichia coli (APEC): an overview of virulence and pathogenesis factors, zoonotic potential, and control strategies. Pathogens 10(4):467. https://doi.org/10.3390/pathogens10040467
doi: 10.3390/pathogens10040467 pubmed: 33921518 pmcid: 8069529
Kathayat D, Helmy YA, Deblais L, Srivastava V, JrG C, Khupse R, Rajashekara G (2021) Novel small molecule growth inhibitor affecting bacterial outer membrane reduces extraintestinal pathogenic Escherichia coli (ExPEC) infection in avian model. Microbiol Spectr 9(2):00006–00021. https://doi.org/10.1128/Spectrum.00006-21
doi: 10.1128/Spectrum.00006-21
Mudenda S, Malama S, Munyeme M, Matafwali SK, Kapila P, Katemangwe P, Muma JB (2023) Antimicrobial resistance profiles of Escherichia coli isolated from laying hens in Zambia: implications and significance on one health. JAC-Antimicrob Resist 5(3):60. https://doi.org/10.1093/jacamr/dlad060
doi: 10.1093/jacamr/dlad060
Mwansa M, Mukuma M, Mulilo E, Kwenda G, Mainda G, Yamba K, Muma JB (2023) Determination of antimicrobial resistance patterns of Escherichia coli isolates from farm workers in broiler poultry production and assessment of antibiotic resistance awareness levels among poultry farmers in Lusaka, Zambia. Front Public Health 10:998860. https://doi.org/10.3389/fpubh.2022.998860
doi: 10.3389/fpubh.2022.998860 pubmed: 36703831 pmcid: 9871586
Johar A, Al-Thani N, Al-Hadidi SH, Dlissi E, Mahmoud MH, Eltai NO (2021) Antibiotic resistance and virulence gene patterns associated with avian pathogenic Escherichia coli (APEC) from broiler chickens in Qatar. Antibiotics 10(5):564. https://doi.org/10.3390/antibiotics10050564
doi: 10.3390/antibiotics10050564 pubmed: 34064966 pmcid: 8151107
Mousavi R, Rahimi E, Shakerian A (2020) Incidence and profiles of antibiotic resistance and virulence markers of the Escherichia coli O157 bacteria recovered from poultry meat. Egypt J Vet Sci 51(2):215–223. https://doi.org/10.21608/ejvs.2020.20516.1141
doi: 10.21608/ejvs.2020.20516.1141
Meguenni N, Chanteloup N, Tourtereau A, Ahmed CA, Bounar-Kechih S Schouler C (2019) Virulence and antibiotic resistance profile of avian Escherichia coli strains isolated from colibacillosis lesions in central of Algeria. Vet World 12(11):1840
Ievy S, Hoque MN, Islam MS, Sobur MA, Ballah FM, Rahman MS, Rahman MT (2022) Genomic characteristics, virulence, and antimicrobial resistance in avian pathogenic Escherichia coli MTR_BAU02 strain isolated from layer farm in Bangladesh. J Glob Antimicrob Resist 30:155–162. https://doi.org/10.1016/j.jgar.2022.06.001
doi: 10.1016/j.jgar.2022.06.001 pubmed: 35671989
Bergey DH (1994) Bergey’s manual of determinative bacteriology. Lippincott Williams & Wilkins
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1992) Short protocols in molecular biology. N Y 275:28764–28773
Bhowmick PP, Devegowda D, Ruwandeepika HD, Fuchs TM, Srikumar S, Karunasagar I, Karunasagar I (2011) gcpA (stm1987) is critical for cellulose production and biofilm formation on polystyrene surface by Salmonella enterica serovar Weltevreden in both high and low nutrient medium. Microb Pathog 50(2):114–122. https://doi.org/10.1016/j.micpath.2010.12.002
doi: 10.1016/j.micpath.2010.12.002 pubmed: 21147214
Asim KB, Joseph LD, Lawrence H, Ronald MA (1991) Detection of Escherichia coli and Shigella spp. in water by using the polymerase chain reaction and gene probes for uid. Appl Environ Microbiol 57(4):1013–1017
Taniguchi H, Ohta H, Ogawa M, Mizuguchi Y (1985) Cloning and expression in Escherichia coli of Vibrio parahaemolyticus thermostable direct hemolysin and thermolabile hemolysin genes. J Bacteriol 162(2):510–5. https://doi.org/10.1128/jb.162.2.510-515.1985
Zheng J-S, Zhu T-T, Liu Y, Liu T, Li Y-Q, Zhang Z, et al. (2018) An epidemiological study of drug resistance and resistance genes in bovine Escherichia coli isolates in Heilongjiang province of China. Acta Sci Vet 46(1):9. https://doi.org/10.22456/1679-9216.89374
Momtaz H, Rahimi E, Moshkelani S (2012) Molecular detection of antimicrobial resistance genes in E. coli isolated from slaughtered commercial chickens in Iran. Vet Med (Praha) 57(4):193–7
Hassan IZ, Wandrag B, Gouws JJ, Qekwana DN, Naidoo V (2021) Antimicrobial resistance and mcr-1 gene in Escherichia coli isolated from poultry samples submitted to a bacteriology laboratory in South Africa. Vet World 14(10):2662–9. https://doi.org/10.14202/vetworld.2021.2662-2669
Phuc Nguyen MC, Woerther P-L, Bouvet M, Andremont A, Leclercq R, Canu A (2009) Escherichia coli as reservoir for macrolide resistance genes. Emerg Infect Dis 15(10):1648–50. https://doi.org/10.3201/eid1510.090696
Chen X, Zhang W, Pan W, Yin J, Pan Z, Gao S, Jiao X (2012) Prevalence of qnr, aac (6′)-Ib-cr, qepA, and oqxAB in Escherichia coli isolates from humans, animals, and the environment. Antimicrob Agents Chemother 56(6):3423-7. https://doi.org/10.1128/aac.06191-11
Mohamed MA, Shehata MA, Rafeek E (2014) Virulence genes content and antimicrobial resistance in Escherichia coli from broiler chickens. Vet Med Int 2014:195189. https://doi.org/10.1155/2014/195189
Manges AR (2016) Escherichia coli and urinary tract infections: the role of poultry-meat. Clin Microbiol Infect 22(2):122–9. https://doi.org/10.1016/j.cmi.2015.11.010
Abd El-Baky RM, Ibrahim RA, Mohamed DS, Ahmed EF, Hashem ZS (2020) Prevalence of virulence genes and their association with antimicrobial resistance among pathogenic E. coli isolated from Egyptian patients with different clinical infections. Infect Drug Resist 13:1221–36. https://doi.org/10.2147/IDR.S241073
van der Westhuizen WA, Bragg RR (2012) Multiplex polymerase chain reaction for screening avian pathogenic Escherichia coli for virulence genes. Avian Pathol 41(1):33–40. https://doi.org/10.1080/03079457.2011.631982
Subedi M, Luitel H, Devkota B, Bhattarai RK, Phuyal S, Panthi P, Shrestha A, Chaudhary DK (2018) Antibiotic resistance pattern and virulence genes content in avian pathogenic Escherichia coli (APEC) from broiler chickens in Chitwan, Nepal. BMC Vet Res 14:1–6. https://doi.org/10.1186/s12917-018-1442-z
Johnson JR, Stell AL (2000) Extended virulence genotypes of Escherichia coli strains from patients with urosepsis in relation to phylogeny and host compromise. J Infect Dis 181(1):261–72. https://doi.org/10.1086/315217
Wang S, Bao Y, Meng Q, Xia Y, Zhao Y, Wang Y, Tang F, ZhuGe X, Yu S, Han X, Dai J (2015) IbeR facilitates stress- resistance, invasion and pathogenicity of avian pathogenic Escherichia coli. PLoS One 10(3): e0119698. https://doi.org/10.1371/journal.pone.0119698
Mbanga J, Nyararai YO (2015) Virulence gene profiles of avian pathogenic Escherichia coli isolated from chickens with colibacillosis in Bulawayo, Zimbabwe. Onderstepoort J Vet Res 82(1):e1–8
Fratamico PM, Briggs CE, Needle D, Chen C-Y, DebRoy C (2003) Sequence of the Escherichia coli O121 O-antigen gene cluster and detection of enterohemorrhagic E. coli O121 by PCR amplification of the wzx and wzy genes. J Clin Microbiol 41(7):3379–83. https://doi.org/10.1128/jcm.41.7.3379-3383.2003
Song X, Hou M, Tu J, Xue M, Shao Y, Jiang H, Liu H, Xue T, Wang G, Qi K (2019) Outer membrane proteins YbjX and PagP co-regulate motility in Escherichia coli via the bacterial chemotaxis pathway. Res Vet Sci 125:279–84. https://doi.org/10.1016/j.rvsc.2019.07.008
Nielsen DW, Ricker N, Barbieri NL, Allen HK, Nolan LK, Logue CM (2020) Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli. BMC Res Notes 13(1):51. https://doi.org/10.1186/s13104-020-4917-5
Frirdich E, Lindner B, Holst O, Whitfield C (2003) Overexpression of the waaZ gene leads to modification of the structure of the inner core region of Escherichia colilipopolysaccharide, truncation of the outer core, and reduction of the amount of O polysaccharide on the cell surface. J Bacteriol 185(5):1659–71. https://doi.org/10.1128/jb.185.5.1659-1671.2003
Ewers C, Li G, Wilking H, Kieβling S, Alt K, Antáo EM, Laturnus C, Diehl I, Glodde S, Homeier T, Böhnke U (2007) Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? Int J Med Microbiol 297(3):163–76. https://doi.org/10.1016/j.ijmm.2007.01.003
Aditya V, Kotian A, Saikrishnan S, Rohit A, Mithoor D, Karunasagar I, Deekshit VK (2022) Effect of ciprofloxacin and in vitro gut conditions on biofilm of Escherichia coli isolated from clinical and environmental sources. J Appl Microbiol 132(2):964–77. https://doi.org/10.1111/jam.15249  
Nath PC, Ojha A, Debnath S, Sharma M, Nayak PK, Sridhar K, Inbaraj BS (2023) Valorization of food waste as animal feed: a step towards sustainable food waste management and circular bioeconomy. Animals 13(8):1366. https://doi.org/10.3390/ani13081366
doi: 10.3390/ani13081366 pubmed: 37106930 pmcid: 10134991
Mu Q, Li J, Sun Y, Mao D, Wang Q, Luo Y (2015) Occurrence of sulfonamide-, tetracycline-, plasmid-mediated quinolone-and macrolide-resistance genes in livestock feedlots in Northern China. Environ Sci Pollut Res 22:6932–6940. https://doi.org/10.1007/s11356-014-3905-5
doi: 10.1007/s11356-014-3905-5
Turan NG, Akdemir A, Ergun ON (2007) Emission of volatile organic compounds during composting of poultry litter. Water Air Soil Pollut 184:177–182. https://doi.org/10.1007/s11270-007-9406-0
doi: 10.1007/s11270-007-9406-0
Bengtsson-Palme J, Kristiansson E, Larsson DJ (2018) Environmental factors influencing the development and spread of antibiotic resistance. FEMS Microbiol Rev 42(1):053. https://doi.org/10.1093/femsre/fux053
doi: 10.1093/femsre/fux053
Darwish WS, Eldaly EA, El-Abbasy MT, Ikenaka Y, Nakayama S, Ishizuka M (2013) Antibiotic residues in food: the African scenario. Jpn J Vet Res 61(Supplement):S13–S222. https://doi.org/10.14943/jjvr.61.suppl.s13
doi: 10.14943/jjvr.61.suppl.s13 pubmed: 23631148
Aalipour F, Mirlohi M, Jalali M (2013) Prevalence of antibiotic residues in commercial milk and its variation by season and thermal processing methods. Int J Environ Health Eng 2(1):41. https://doi.org/10.4103/2277-9183.122429
doi: 10.4103/2277-9183.122429
van den Bogaard AE, Stobberingh EE (2000) Epidemiology of resistance to antibiotics: links between animals and humans. Int J Antimicrob Agents 14(4):327–335. https://doi.org/10.1016/S0924-8579(00)00145-X
doi: 10.1016/S0924-8579(00)00145-X pubmed: 10794955
Marshall BM, Levy SB (2011) Food animals and antimicrobials: impacts on human health. Clin Microbiol Rev 24(4):718–733. https://doi.org/10.1128/cmr.00002-11
doi: 10.1128/cmr.00002-11 pubmed: 21976606 pmcid: 3194830
de Been M, Lanza VF, de Toro M, Scharringa J, Dohmen W, Du Y, Hu J, Lei Y, Li N, Tooming-Klunderud A, Heederik DJ (2014) Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages. PLoS Genet 10(12):1004776. https://doi.org/10.1371/journal.pgen.1004776
doi: 10.1371/journal.pgen.1004776
Van Boeckel TP, Glennon EE, Chen D, Gilbert M, Robinson TP, Grenfell BT, Levin SA, Bonhoeffer S, Laxminarayan R (2017) Reducing antimicrobial use in food animals. Science 357(6358):1350–1352. https://doi.org/10.1126/science.aao1495
doi: 10.1126/science.aao1495 pubmed: 28963240
Du L, Liu W (2012) Occurrence, fate, and ecotoxicity of antibiotics in agro-ecosystems. A review. Agron Sustain Dev 32:309–327. https://doi.org/10.1007/s13593-011-0062-9
doi: 10.1007/s13593-011-0062-9
Koju P, Shrestha R, Shrestha A, Tamrakar S, Rai A, Shrestha P, Madhup SK, Katuwal N, Shrestha A, Shrestha A, Shrestha S (2022) Antimicrobial resistance in E. coli isolated from chicken cecum samples and factors contributing to antimicrobial resistance in Nepal. Trop Med Infect Dis 7(9):249. https://doi.org/10.3390/tropicalmed7090249
doi: 10.3390/tropicalmed7090249 pubmed: 36136660 pmcid: 9504632
Miles TD, McLaughlin W, Brown PD (2006) Antimicrobial resistance of Escherichia coliisolates from broiler chickens and humans. BMC Vet Res 2(1):1–9. https://doi.org/10.1186/1746-6148-2-7
doi: 10.1186/1746-6148-2-7
Chemaly RF, Simmons S, JrC D, Ghantoji SS, Rodriguez M, Gubb J, Stachowiak J, Stibich M (2014) The role of the healthcare environment in the spread of multidrug-resistant organisms: update on current best practices for containment. Ther Adv Infect Dis 2(3–4):79–90. https://doi.org/10.1177/2049936114543287
doi: 10.1177/2049936114543287 pubmed: 25469234 pmcid: 4250270
Kumar A, Pal D (2018) Antibiotic resistance and wastewater: Correlation, impact and critical human health challenges. J Environ Chem Eng 6(1):52–58. https://doi.org/10.1016/j.jece.2017.11.059
doi: 10.1016/j.jece.2017.11.059
Ashbolt NJ, Amézquita A, Backhaus T, Borriello P, Brandt KK, Collignon P, Coors A, Finley R, Gaze WH, Heberer T, Lawrence JR (2013) Human health risk assessment (HHRA) for environmental development and transfer of antibiotic resistance. Environ Health Perspect 121(9):993–1001. https://doi.org/10.1289/ehp.1206316
doi: 10.1289/ehp.1206316 pubmed: 23838256 pmcid: 3764079
Larsson DJ, Andremont A, Bengtsson-Palme J, Brandt KK, de Roda Husman AM, Fagerstedt P, Fick J, Flach CF, Gaze WH, Kuroda M, Kvint K (2018) Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance. Environ Int 117:132–138. https://doi.org/10.1016/j.envint.2018.04.041
doi: 10.1016/j.envint.2018.04.041 pubmed: 29747082
Peng L, Matthijs MG, Haagsman HP, Veldhuizen EJ (2018) Avian pathogenic Escherichia coli-induced activation of chicken macrophage HD11 cells. Dev Comp Immunol 87:75–83. https://doi.org/10.1016/j.dci.2018.05.019
doi: 10.1016/j.dci.2018.05.019 pubmed: 29890365
Geidam YA, Ambali AG, Onyeyili PA (2012) Detection and antibiotic sensitivity pattern of avian pathogenic Escherichia coli strains among rural chickens in the arid region of north-eastern Nigeria. Vet World 5(6):325. https://doi.org/10.5455/vetworld.2012.325-329
doi: 10.5455/vetworld.2012.325-329
Weerts EA, Matthijs MG, Bonhof J, van Haarlem DA, Dwars RM, Gröne A, Verheije MH, Jansen CA (2021) The contribution of the immune response to enhanced colibacillosis upon preceding viral respiratory infection in broiler chicken in a dual infection model. Vet Immunol Immunopathol 238:110276. https://doi.org/10.1016/j.vetimm.2021.110276
doi: 10.1016/j.vetimm.2021.110276 pubmed: 34126552
Kibret M, Abera B (2011) Antimicrobial susceptibility patterns of E. coli from clinical sources in northeast Ethiopia. Afr Health Sci 11:40–45. https://doi.org/10.4314/ahs.v11i3.70069
doi: 10.4314/ahs.v11i3.70069
Aworh MK, Kwaga JK, Hendriksen RS, Okolocha EC, Thakur S (2021) Genetic relatedness of multidrug resistant Escherichia coli isolated from humans, chickens and poultry environments. Antimicrob Resist Infect Control 10:1–13. https://doi.org/10.1186/s13756-021-00930-x
doi: 10.1186/s13756-021-00930-x
Sumbana JJ (2020) Phenotypic and Molecular Characterization of Extraintestinal Pathogenic Escherichia coli and other Gram-negative invasive bacteria in Mozambique (Doctoral dissertation, University of Sassari)
Vounba P, Arsenault J, Bada-Alambédji R, Fairbrother JM (2019) Pathogenic potential and the role of clones and plasmids in beta-lactamase-producing E. coli from chicken faeces in Vietnam. BMC Vet Re 15(1):1–3. https://doi.org/10.1186/s12917-019-1849-1
doi: 10.1186/s12917-019-1849-1
Awad A, Arafat N, Elhadidy M (2016) Genetic elements associated with antimicrobial resistance among avian pathogenic Escherichia coli. Ann Clin Microbiol Antimicrob 15(1):1–8. https://doi.org/10.1186/s12941-016-0174-9
doi: 10.1186/s12941-016-0174-9
Ahmed AM, Shimamoto T, Shimamoto T (2013) Molecular characterization of multidrug-resistant avian pathogenic Escherichia coli isolated from septicemic broilers. Int J Med Microbiol 303(8):475–483. https://doi.org/10.1016/j.ijmm.2013.06.009
doi: 10.1016/j.ijmm.2013.06.009 pubmed: 23891276
Mead A, Billon-Lotz C, Olsen R, Swift B, Richez P, Stabler R, Pelligand L (2022) Epidemiological prevalence of phenotypical resistances and mobilised colistin resistance in avian commensal and pathogenic E. coli from Denmark, France, The Netherlands, and the UK. Antibiotics 11(5):631. https://doi.org/10.3390/antibiotics11050631
doi: 10.3390/antibiotics11050631 pubmed: 35625275 pmcid: 9137498
Perreten V, Strauss C, Collaud A, Gerber D (2016) Colistin resistance gene mcr-1 in avian-pathogenic Escherichia coli in South Africa. Antimicrob Agents Chemother 60(7):4414. 10.1128%2FAAC.00548–16
Saha O, Hoque MN, Islam OK, Rahaman MM, Sultana M, Hossain MA (2020) Multidrug-resistant avian pathogenic Escherichia coli strains and association of their virulence genes in Bangladesh. Microorganisms 8(8):1135. https://doi.org/10.3390/microorganisms8081135
doi: 10.3390/microorganisms8081135 pubmed: 32727140 pmcid: 7465658
Bass L, Liebert CA, Lee MD, Summers AO, White DG, Thayer SG, Maurer JJ (1999) Incidence and characterization of integrons, genetic elements mediating multiple-drug resistance, in avian Escherichia coli. Antimicrob Agents Chemother 43(12):2925–2929. https://doi.org/10.1128/aac.43.12.2925
doi: 10.1128/aac.43.12.2925 pubmed: 10582884 pmcid: 89589
Subedi M, Luitel H, Devkota B, Bhattarai RK, Phuyal S, Panthi P, Shrestha A, Chaudhary DK (2018) Antibiotic resistance pattern and virulence genes content in avian pathogenic Escherichia coli (APEC) from broiler chickens in Chitwan Nepal. BMC Vet Res 14(1):1–6. https://doi.org/10.1186/s12917-018-1442-z
doi: 10.1186/s12917-018-1442-z
Cunha MPV, Saidenberg AB, Moreno AM, Ferreira AJP, Vieira MAM, Gomes TAT, Knöbl T (2017) Pandemic extra-intestinal pathogenic Escherichia coli (ExPEC) clonal group O6-B2-ST73 as a cause of avian colibacillosis in Brazil. PLoS One 12(6):0178970. https://doi.org/10.1371/journal.pone.0178970
doi: 10.1371/journal.pone.0178970
Goldstone RJ, Popat R, Schuberth HJ, Sandra O, Sheldon IM, Smith DG (2014) Genomic characterisation of an endometrial pathogenic Escherichia coli strain reveals the acquisition of genetic elements associated with extra-intestinal pathogenicity. BMC Genomics 15(1):1–15. https://doi.org/10.1186/1471-2164-15-1075
doi: 10.1186/1471-2164-15-1075
Kim J, Ahn J (2022) Emergence and spread of antibiotic-resistant foodborne pathogens from farm to table. Food Sci Biotechnol 31(12):1481–1499. https://doi.org/10.1007/s10068-022-01157-1
doi: 10.1007/s10068-022-01157-1 pubmed: 36065433 pmcid: 9435411

Auteurs

Sahil Yoginath Bhambure (S)

Nitte (Deemed to be University), Nitte University Centre for Science Education and Research (NUCSER), Paneer campus, Deralakatte, Mangalore, 575018, India.

Lakiesha Inacia Coelho E Costa (LIC)

Nitte (Deemed to be University), Nitte University Centre for Science Education and Research (NUCSER), Paneer campus, Deralakatte, Mangalore, 575018, India.

Ashwitha M Gatty (AM)

Nitte (Deemed to be University), Nitte University Centre for Science Education and Research (NUCSER), Paneer campus, Deralakatte, Mangalore, 575018, India.

Kavitha Guladahalli Manjunatha (KG)

Nitte (Deemed to be University), Nitte University Centre for Science Education and Research (NUCSER), Paneer campus, Deralakatte, Mangalore, 575018, India.

Rajeshwari Vittal (R)

Nitte (Deemed to be University), Nitte University Centre for Science Education and Research (NUCSER), Paneer campus, Deralakatte, Mangalore, 575018, India.

Akhila Dharnappa Sannejal (AD)

Nitte (Deemed to be University), Nitte University Centre for Science Education and Research (NUCSER), Paneer campus, Deralakatte, Mangalore, 575018, India. akhila@nitte.edu.in.

Classifications MeSH