Distribution-informed and wavelength-flexible data-driven photoacoustic oximetry.


Journal

Journal of biomedical optics
ISSN: 1560-2281
Titre abrégé: J Biomed Opt
Pays: United States
ID NLM: 9605853

Informations de publication

Date de publication:
Jun 2024
Historique:
received: 19 03 2024
revised: 13 05 2024
accepted: 17 05 2024
medline: 6 6 2024
pubmed: 6 6 2024
entrez: 6 6 2024
Statut: ppublish

Résumé

Photoacoustic imaging (PAI) promises to measure spatially resolved blood oxygen saturation but suffers from a lack of accurate and robust spectral unmixing methods to deliver on this promise. Accurate blood oxygenation estimation could have important clinical applications from cancer detection to quantifying inflammation. We address the inflexibility of existing data-driven methods for estimating blood oxygenation in PAI by introducing a recurrent neural network architecture. We created 25 simulated training dataset variations to assess neural network performance. We used a long short-term memory network to implement a wavelength-flexible network architecture and proposed the Jensen-Shannon divergence to predict the most suitable training dataset. The network architecture can flexibly handle the input wavelengths and outperforms linear unmixing and the previously proposed learned spectral decoloring method. Small changes in the training data significantly affect the accuracy of our method, but we find that the Jensen-Shannon divergence correlates with the estimation error and is thus suitable for predicting the most appropriate training datasets for any given application. A flexible data-driven network architecture combined with the Jensen-Shannon divergence to predict the best training data set provides a promising direction that might enable robust data-driven photoacoustic oximetry for clinical use cases.

Identifiants

pubmed: 38841431
doi: 10.1117/1.JBO.29.S3.S33303
pii: 240079SSR
pmc: PMC11151660
doi:

Substances chimiques

Oxygen S88TT14065

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

S33303

Informations de copyright

© 2024 The Authors.

Auteurs

Janek Gröhl (J)

University of Cambridge, Cancer Research UK Cambridge Institute, Cambridge, United Kingdom.
University of Cambridge, Department of Physics, Cambridge, United Kingdom.

Kylie Yeung (K)

University of Cambridge, Cancer Research UK Cambridge Institute, Cambridge, United Kingdom.
University of Cambridge, Department of Physics, Cambridge, United Kingdom.

Kevin Gu (K)

University of Cambridge, Cancer Research UK Cambridge Institute, Cambridge, United Kingdom.
University of Cambridge, Department of Physics, Cambridge, United Kingdom.

Thomas R Else (TR)

University of Cambridge, Cancer Research UK Cambridge Institute, Cambridge, United Kingdom.
University of Cambridge, Department of Physics, Cambridge, United Kingdom.

Monika Golinska (M)

University of Cambridge, Cancer Research UK Cambridge Institute, Cambridge, United Kingdom.
University of Cambridge, Department of Physics, Cambridge, United Kingdom.
Medical University of Lodz, Department of Biostatistics and Translational Medicine, Poland.

Ellie V Bunce (EV)

University of Cambridge, Cancer Research UK Cambridge Institute, Cambridge, United Kingdom.
University of Cambridge, Department of Physics, Cambridge, United Kingdom.

Lina Hacker (L)

University of Oxford, Department of Oncology, Oxford, United Kingdom.

Sarah E Bohndiek (SE)

University of Cambridge, Cancer Research UK Cambridge Institute, Cambridge, United Kingdom.
University of Cambridge, Department of Physics, Cambridge, United Kingdom.

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Classifications MeSH