CBD2: A functional biomarker database for colorectal cancer.

biomarker colorectal cancer database network analysis

Journal

iMeta
ISSN: 2770-596X
Titre abrégé: Imeta
Pays: Australia
ID NLM: 9918350383706676

Informations de publication

Date de publication:
Feb 2024
Historique:
received: 10 10 2023
accepted: 07 11 2023
medline: 13 6 2024
pubmed: 13 6 2024
entrez: 13 6 2024
Statut: epublish

Résumé

The rapidly evolving landscape of biomarkers for colorectal cancer (CRC) necessitates an integrative, updated repository. In response, we constructed the Colorectal Cancer Biomarker Database (CBD), which collected and displayed the curated biomedicine information for 870 CRC biomarkers in the previous study. Building on CBD, we have now developed CBD2, which includes information on 1569 newly reported biomarkers derived from different biological sources (DNA, RNA, protein, and others) and clinical applications (diagnosis, treatment, and prognosis). CBD2 also incorporates information on nonbiomarkers that have been identified as unsuitable for use as biomarkers in CRC. A key new feature of CBD2 is its network analysis function, by which users can investigate the visible and topological network between biomarkers and identify their relevant pathways. CBD2 also allows users to query a series of chemicals, drug combinations, or multiple targets, to enable multidrug, multitarget, multipathway analyses, toward facilitating the design of polypharmacological treatments for CRC. CBD2 is freely available at http://www.eyeseeworld.com/cbd.

Identifiants

pubmed: 38868513
doi: 10.1002/imt2.155
pii: IMT2155
pmc: PMC10989088
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e155

Informations de copyright

© 2023 The Authors. iMeta published by John Wiley & Sons Australia, Ltd on behalf of iMeta Science.

Déclaration de conflit d'intérêts

The authors declare no conflict of interest.

Auteurs

Xueli Zhang (X)

Medical Research Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences) Southern Medical University Guangzhou China.
Department of Oncology and Department of Biomedical and Clinical Sciences Linköping University Linköping Sweden.
Department of Ophthalmology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Guangdong Eye Institute Southern Medical University Guangzhou China.
Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application Guangzhou China.

Min Li (M)

Medical Research Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences) Southern Medical University Guangzhou China.
MOE Key Laboratory of Geriatric Diseases and Immunology, Suzhou Key Laboratory of Pathogen Bioscience and Anti-infective Medicine, Department of Bioinformatics, Center for Systems Biology, School of Biology and Basic Medical Sciences Suzhou Medical College of Soochow University Suzhou China.

Siting Ye (S)

Department of Ultrasound The Second Affiliated Hospital of Guangzhou University of Chinese Medicine Guangzhou China.
Department of Orthopaedics The Second Affiliated Hospital of Guangzhou University of Chinese Medicine Guangzhou China.

Ke Shen (K)

Department of Critical Care Medicine and Institutes for Systems Genetics, Frontiers Science Center for Disease-related Molecular Network, West China Hospital Sichuan University Chengdu China.

Haining Yuan (H)

School of Laboratory Medicine and Bioengineering Hangzhou Medical College Hangzhou China.

Shoaib Bakhtyar (S)

School of Medicine, Institute of Medical Sciences Örebro University Örebro Sweden.

Qiliang Peng (Q)

Department of Radiotherapy and Oncology The Second Affiliated Hospital of Soochow University Suzhou China.

Yongsheng Liu (Y)

Department of Immunology, Genetics and Pathology Uppsala University Uppsala Sweden.

Yingying Wang (Y)

Key Laboratory of Public Health Safety, School of Public Health Fudan University Shanghai China.

Manshi Li (M)

Key Laboratory of Public Health Safety, School of Public Health Fudan University Shanghai China.

Chi Zhang (C)

Department of Otolaryngology Guangzhou Women and Children's Medical Centre Guangzhou China.

Yixin Wang (Y)

MOE Key Laboratory of Geriatric Diseases and Immunology, Suzhou Key Laboratory of Pathogen Bioscience and Anti-infective Medicine, Department of Bioinformatics, Center for Systems Biology, School of Biology and Basic Medical Sciences Suzhou Medical College of Soochow University Suzhou China.
School of Medicine The Chinese University of Hong Kong, Shenzhen Shenzhen China.

Xiaohe Bai (X)

Department of Mathematics University of California San Diego California USA.

Shunming Liu (S)

Department of Ophthalmology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Guangdong Eye Institute Southern Medical University Guangzhou China.

Ke Zhao (K)

Medical Research Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences) Southern Medical University Guangzhou China.
Department of Oncology and Department of Biomedical and Clinical Sciences Linköping University Linköping Sweden.
Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application Guangzhou China.
Department of Radiology, Guangdong Provincial People's Hospital Guangdong Academy of Medical Sciences Guangzhou China.

Bairong Shen (B)

Institutes for Systems Genetics, Frontiers Science Center for Disease-Related Molecular Network, West China Hospital Sichuan University Chengdu China.

Dirk Repsilber (D)

School of Medicine, Institute of Medical Sciences Örebro University Örebro Sweden.

Guang Hu (G)

MOE Key Laboratory of Geriatric Diseases and Immunology, Suzhou Key Laboratory of Pathogen Bioscience and Anti-infective Medicine, Department of Bioinformatics, Center for Systems Biology, School of Biology and Basic Medical Sciences Suzhou Medical College of Soochow University Suzhou China.

Hong Zhang (H)

School of Medicine, Institute of Medical Sciences Örebro University Örebro Sweden.

Xiao-Feng Sun (XF)

Department of Oncology and Department of Biomedical and Clinical Sciences Linköping University Linköping Sweden.

Classifications MeSH